##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename DGY952_1_ACAGTG_L005_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 19533739 Filtered Sequences 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.261194029468705 34.0 33.0 34.0 31.0 34.0 2 33.412322392553726 34.0 34.0 34.0 31.0 34.0 3 33.41927410824932 34.0 34.0 34.0 31.0 34.0 4 36.66082166860118 37.0 37.0 37.0 35.0 37.0 5 36.6072394025537 37.0 37.0 37.0 35.0 37.0 6 36.612827272853394 37.0 37.0 37.0 35.0 37.0 7 36.571021502846946 37.0 37.0 37.0 35.0 37.0 8 36.57090938913436 37.0 37.0 37.0 35.0 37.0 9 38.44976499378844 39.0 39.0 39.0 37.0 39.0 10 38.43769715567511 39.0 39.0 39.0 37.0 39.0 11 38.44725763971762 39.0 39.0 39.0 37.0 39.0 12 38.438518094257326 39.0 39.0 39.0 37.0 39.0 13 38.41809507130202 39.0 39.0 39.0 37.0 39.0 14 40.07742096891947 41.0 40.0 41.0 38.0 41.0 15 40.049260052056596 41.0 40.0 41.0 38.0 41.0 16 40.0356646518109 41.0 40.0 41.0 38.0 41.0 17 40.026281809130346 41.0 40.0 41.0 38.0 41.0 18 40.00553898053005 41.0 40.0 41.0 38.0 41.0 19 40.01578187360853 41.0 40.0 41.0 38.0 41.0 20 39.979716888814785 41.0 40.0 41.0 38.0 41.0 21 39.96499436180651 41.0 40.0 41.0 38.0 41.0 22 39.9331173617094 41.0 40.0 41.0 38.0 41.0 23 39.90054413033777 41.0 40.0 41.0 38.0 41.0 24 39.87063408597811 41.0 40.0 41.0 38.0 41.0 25 39.845235722664256 41.0 40.0 41.0 38.0 41.0 26 39.73494311560117 41.0 40.0 41.0 38.0 41.0 27 39.66958629886475 41.0 40.0 41.0 38.0 41.0 28 39.60904228320037 41.0 40.0 41.0 38.0 41.0 29 39.30808643445067 41.0 40.0 41.0 37.0 41.0 30 39.32887400614905 41.0 39.0 41.0 37.0 41.0 31 39.600702814755536 41.0 40.0 41.0 38.0 41.0 32 39.62846432011813 41.0 40.0 41.0 38.0 41.0 33 39.659604799675066 41.0 40.0 41.0 38.0 41.0 34 39.75236169583304 41.0 40.0 41.0 38.0 41.0 35 39.79978600103134 41.0 40.0 41.0 38.0 41.0 36 39.802204688001616 41.0 40.0 41.0 38.0 41.0 37 39.77310063372916 41.0 40.0 41.0 38.0 41.0 38 39.72961878931627 41.0 40.0 41.0 38.0 41.0 39 39.72723634732705 41.0 40.0 41.0 38.0 41.0 40 39.68978110130375 41.0 40.0 41.0 38.0 41.0 41 39.66254361236218 41.0 40.0 41.0 38.0 41.0 42 39.643429913750765 41.0 40.0 41.0 38.0 41.0 43 39.60725209853577 41.0 40.0 41.0 37.0 41.0 44 39.5678339922531 41.0 40.0 41.0 37.0 41.0 45 39.51030783200287 41.0 40.0 41.0 37.0 41.0 46 39.48473658832034 41.0 40.0 41.0 37.0 41.0 47 39.436052002128214 41.0 40.0 41.0 37.0 41.0 48 39.402683480105885 41.0 39.0 41.0 37.0 41.0 49 39.36110198871808 41.0 39.0 41.0 37.0 41.0 50 39.299956091355575 41.0 39.0 41.0 36.0 41.0 51 38.391288324268075 40.0 38.0 41.0 34.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 6.0 11 14.0 12 14.0 13 19.0 14 8.0 15 22.0 16 37.0 17 73.0 18 164.0 19 373.0 20 1158.0 21 1856.0 22 2965.0 23 5087.0 24 8675.0 25 13105.0 26 18636.0 27 27209.0 28 38239.0 29 51612.0 30 68979.0 31 91308.0 32 119892.0 33 160051.0 34 219510.0 35 315135.0 36 494993.0 37 932183.0 38 2585025.0 39 1.435607E7 40 21314.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 15.690887993062294 31.188076874459785 32.04767910368718 21.073356028790737 2 18.87210635915633 31.525904999549752 32.26286068427555 17.339127957018366 3 17.11924685796201 30.91876061208763 32.96380687793566 18.9981856520147 4 17.731065209789072 29.844828990496904 32.58767817057451 19.83642762913951 5 19.66577886826847 30.063033583884764 31.91258968980502 18.35859785804174 6 19.56993487012394 30.2548017048861 30.636955884380352 19.53830754060961 7 19.80311091491496 30.764627294344415 30.77954507327041 18.65271671747022 8 19.06757840882383 30.84866650465638 30.830513298042938 19.25324178847685 9 19.197231006311693 29.80673592495528 31.46592160364178 19.530111465091245 10 19.064773006335344 30.561486461962044 30.711672762700477 19.662067769002135 11 19.50717166846552 30.1047177910998 30.813368602908024 19.574741937526653 12 18.972041143787166 30.224756253782235 30.740433257555043 20.06276934487555 13 18.89064351684027 30.83069759455678 30.758627418949334 19.52003146965361 14 19.061506862562258 30.46795086183961 30.6941799519283 19.77636232366983 15 18.963241956045486 30.75455911203478 30.71291321712209 19.569285714797648 16 18.965032756913562 30.313674202363412 30.743310330910024 19.977982709813006 17 19.570757973321538 30.241948096459794 30.669638960495778 19.51765496972289 18 19.120993681752378 30.144597508956174 31.00949080972158 19.724917999569872 19 19.144525704989952 30.17349629310479 30.58069265001847 20.101285351886787 20 19.304527547637278 30.16365801304716 30.883837637907895 19.647976801407665 21 19.60218373315489 30.0717097061593 30.500765895682246 19.82534066500356 22 19.194935731647632 30.500995202142754 30.524042527485808 19.780026538723806 23 19.368316961543858 30.526486831673118 30.42217884261289 19.683017364170137 24 19.279358756954984 30.054353833220265 30.404700532234347 20.2615868775904 25 19.263824617261005 30.112567100398618 30.7867041791359 19.83690410320448 26 19.440348275392672 30.132661550219524 30.323974797165317 20.103015377222487 27 19.33601083875679 30.033748375885356 30.351573384204194 20.278667401153665 28 19.318925985263235 30.47810931645742 30.336028389326447 19.866936308952898 29 19.875580460324443 30.121984997650564 30.262894433203023 19.739540108821966 30 19.376831295047577 30.042812303391713 30.667971563151326 19.912384838409388 31 19.332505344561884 30.094584551027875 30.303211508671897 20.269698595738348 32 19.50116502586214 30.528590779798844 30.241934988073087 19.728309206265934 33 19.383713217174765 30.08777088311647 30.247348256743518 20.281167642965247 34 19.339277485945995 30.506200145403906 30.2750437747673 19.879478593882798 35 19.496229162406852 30.171830439936343 30.216287794510777 20.115652603146028 36 19.419053483034457 30.471097707248195 30.230032987668988 19.879815822048357 37 19.766745754562276 30.15367733111508 30.23772198185203 19.84185493247061 38 19.528972112665834 30.14552266295471 30.601525381287725 19.723979843091733 39 19.79901108004026 30.10567046991617 30.232792454800787 19.86252599524278 40 19.398867232886374 30.534861139357922 30.224429535589653 19.84184209216605 41 19.49569746353622 30.170980126306045 30.57959052428171 19.75373188587603 42 19.41297503973805 30.090070865741424 30.21352799085944 20.283426103661082 43 19.360726002009276 30.16750560609922 30.62446707625657 19.847301315634933 44 19.497629046388916 30.178519522855446 30.21746014935912 20.106391281396522 45 19.790219778532045 30.08862813759068 30.25945948713223 19.861692596745044 46 19.385034876860487 30.16443810065768 30.61918670990213 19.831340312579698 47 19.51305152710415 30.561700390545226 30.212760814960788 19.71248726738983 48 19.408709318219206 30.113885870014595 30.590038873634807 19.887365938131392 49 19.774034270414116 30.17861429643564 30.188149104322065 19.85920232882818 50 19.513990458354655 30.175626226482503 30.205182396955244 20.1052009182076 51 19.428947101343972 30.10522626837804 30.189244244783982 20.276582385494017 >>END_MODULE >>Per base GC content pass #Base %GC 1 36.76424402185303 2 36.211234316174696 3 36.11743250997671 4 37.56749283892859 5 38.024376726310216 6 39.10824241073355 7 38.45582763238517 8 38.320820197300684 9 38.72734247140294 10 38.72684077533748 11 39.08191360599218 12 39.03481048866272 13 38.41067498649388 14 38.83786918623209 15 38.53252767084313 16 38.94301546672657 17 39.08841294304443 18 38.84591168132225 19 39.24581105687674 20 38.95250434904495 21 39.427524398158454 22 38.974962270371435 23 39.051334325713995 24 39.54094563454538 25 39.10072872046548 26 39.54336365261516 27 39.61467823991045 28 39.185862294216136 29 39.61512056914641 30 39.28921613345696 31 39.60220394030023 32 39.22947423212808 33 39.66488086014001 34 39.21875607982879 35 39.61188176555288 36 39.29886930508282 37 39.60860068703288 38 39.25295195575757 39 39.66153707528304 40 39.24070932505243 41 39.249429349412246 42 39.69640114339913 43 39.20802731764421 44 39.60402032778544 45 39.65191237527709 46 39.216375189440186 47 39.22553879449398 48 39.2960752563506 49 39.633236599242295 50 39.61919137656225 51 39.70552948683799 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7054.0 1 8745.5 2 10437.0 3 10382.0 4 10327.0 5 9340.5 6 8354.0 7 8341.0 8 8328.0 9 8495.5 10 8663.0 11 9874.5 12 11086.0 13 13533.5 14 15981.0 15 21174.5 16 26368.0 17 36056.5 18 45745.0 19 65153.0 20 84561.0 21 116368.5 22 148176.0 23 201430.5 24 254685.0 25 339087.0 26 535246.0 27 647003.0 28 782741.0 29 918479.0 30 1073041.5 31 1227604.0 32 1380261.5 33 1532919.0 34 1660974.5 35 1789030.0 36 1861710.5 37 1934391.0 38 1948336.5 39 1962282.0 40 1902526.5 41 1842771.0 42 1739666.0 43 1636561.0 44 1509276.0 45 1381991.0 46 1235586.0 47 1089181.0 48 962968.5 49 836756.0 50 706320.5 51 575885.0 52 518697.5 53 461510.0 54 358510.0 55 255510.0 56 206521.0 57 157532.0 58 123177.0 59 88822.0 60 70246.0 61 51670.0 62 42762.5 63 33855.0 64 27389.0 65 20923.0 66 16565.5 67 12208.0 68 9003.0 69 5798.0 70 4191.5 71 2585.0 72 2036.0 73 1487.0 74 1276.5 75 967.5 76 869.0 77 744.5 78 620.0 79 540.0 80 460.0 81 408.0 82 356.0 83 267.5 84 179.0 85 135.0 86 91.0 87 74.5 88 58.0 89 37.0 90 16.0 91 13.5 92 11.0 93 8.0 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.046724285606560015 2 0.0 3 0.0 4 0.0 5 1.2798369016807278E-4 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 5.119347606722912E-6 16 0.0 17 2.0477390426891647E-5 18 0.0 19 0.0021040518663631167 20 7.167086649412076E-4 21 0.0020477390426891645 22 9.726760452773531E-5 23 0.0012286434256134986 24 0.004105716780591775 25 0.0016535492769715002 26 0.11407442272060664 27 0.10648243021983655 28 0.12509125877027436 29 0.7479827594706779 30 0.11053183417675438 31 0.006491332765324652 32 0.07606838608829575 33 0.0013719851586017403 34 0.009926415009435726 35 0.0021142905615765626 36 0.019013257011368894 37 0.024746926330898558 38 0.006040830175933035 39 0.00675241949326752 40 0.017974029447204144 41 0.01740066251525118 42 0.007433292724961668 43 0.011943437966484552 44 0.03365971051420314 45 0.002247393599351358 46 0.016218093218098185 47 0.026328804741375937 48 0.01019774043259204 49 0.027086468187170927 50 0.02468549415961788 51 0.02347220877682455 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1.9533739E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 56.96244805656408 #Duplication Level Relative count 1 100.0 2 64.17945193330968 3 26.636218517204682 4 8.606775452288046 5 2.482041504079461 6 0.9433753103937567 7 0.5210180915218162 8 0.3946434905995034 9 0.35473572188719404 10++ 17.59156615821213 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCC 73071 0.3740758489708499 TruSeq Adapter, Index 5 (100% over 51bp) >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position GAAGA 2118300 2.2404923 6.11229 6 GGAAG 1099250 1.8328303 7.9426928 5 AAGAG 1513095 1.6003767 5.4193254 7 CTCCA 1015695 1.5425538 6.928196 24 TCCAG 896305 1.3986317 6.9634833 25 AGAGC 783225 1.2709892 7.121954 8 CCAGT 809515 1.2632009 6.8053875 26 GAGCA 757900 1.2298927 7.109764 9 CAGTG 756690 1.2132103 6.92534 35 ATGCC 766765 1.1964921 6.766376 47 CACAC 767335 1.1795036 6.6151996 12 CGGAA 718920 1.1666372 7.091488 4 AGCAC 737850 1.1653405 6.8870325 10 CACAG 687540 1.0858822 6.720465 33 ACTCC 694935 1.0554099 6.5149546 23 GCACA 622300 0.9828439 6.6986914 11 GTCTG 608405 0.9637706 6.6256967 17 GTCAC 605565 0.94494885 6.513941 29 CGTCT 609885 0.94028234 6.4172826 16 TCTCG 581345 0.89628124 6.3525734 41 ACGTC 567020 0.88480175 6.4797015 15 CTCGT 572710 0.88296825 6.3325 42 CAGTC 564485 0.880846 6.4629045 27 ATCGG 542265 0.8694201 6.763351 2 TCGGA 524115 0.84031993 6.7618446 3 GATCG 501400 0.8039008 6.5455465 1 CACGT 497170 0.7758049 6.370776 14 ACACG 442905 0.69951224 6.4180365 13 >>END_MODULE