FastQCFastQC Report
Wed 23 Jul 2014
DGY1181_1_GGCTAC_L006_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename DGY1181_1_GGCTAC_L006_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 14760280
Filtered Sequences 0
Sequence length 51
%GC 37

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC 22083 0.14961098298948258 TruSeq Adapter, Index 11 (100% over 51bp)

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
ACGGC 275570 0.99067193 5.4120617 32
CGGCT 259170 0.9204412 5.337415 33
CACGG 228575 0.82172525 5.188248 31
Produced by FastQC (version 0.10.1)