##FastQC	0.10.1
>>Basic Statistics	pass
#Measure	Value	
Filename	LW202_GTTTCG_L003_R1_001.fastq.gz	
File type	Conventional base calls	
Encoding	Sanger / Illumina 1.9	
Total Sequences	8528916	
Filtered Sequences	0	
Sequence length	51	
%GC	41	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.581784015694375	34.0	31.0	34.0	31.0	34.0
2	32.809602885055966	34.0	31.0	34.0	31.0	34.0
3	32.90790904729276	34.0	31.0	34.0	31.0	34.0
4	36.32654724234592	37.0	37.0	37.0	35.0	37.0
5	36.24836966385881	37.0	37.0	37.0	35.0	37.0
6	36.22549289968385	37.0	37.0	37.0	35.0	37.0
7	36.1890494641992	37.0	37.0	37.0	35.0	37.0
8	36.17891804773315	37.0	37.0	37.0	35.0	37.0
9	37.96518408669988	39.0	38.0	39.0	35.0	39.0
10	37.94268791016349	39.0	38.0	39.0	35.0	39.0
11	37.92822710412437	39.0	38.0	39.0	35.0	39.0
12	37.90660759233647	39.0	38.0	39.0	35.0	39.0
13	37.89613287315762	39.0	38.0	39.0	35.0	39.0
14	39.37562370176937	41.0	39.0	41.0	36.0	41.0
15	39.324751117258046	41.0	39.0	41.0	36.0	41.0
16	39.31633574536318	41.0	39.0	41.0	36.0	41.0
17	39.291683609030734	40.0	39.0	41.0	36.0	41.0
18	39.259057891999404	40.0	39.0	41.0	36.0	41.0
19	39.30041766151759	40.0	39.0	41.0	36.0	41.0
20	39.27594643914889	40.0	39.0	41.0	36.0	41.0
21	39.224997291566716	40.0	39.0	41.0	36.0	41.0
22	39.13956275334404	40.0	39.0	41.0	36.0	41.0
23	39.053625103119785	40.0	39.0	41.0	36.0	41.0
24	38.989334166264506	40.0	38.0	41.0	36.0	41.0
25	38.96989289142958	40.0	38.0	41.0	36.0	41.0
26	38.85103769341848	40.0	38.0	41.0	35.0	41.0
27	38.75159469269014	40.0	38.0	41.0	35.0	41.0
28	38.56877966672435	40.0	38.0	41.0	34.0	41.0
29	38.28658378157318	40.0	38.0	41.0	34.0	41.0
30	38.23762070115358	40.0	38.0	41.0	34.0	41.0
31	38.49980255404086	40.0	38.0	41.0	34.0	41.0
32	38.4898509963048	40.0	38.0	41.0	34.0	41.0
33	38.52078505638934	40.0	38.0	41.0	34.0	41.0
34	38.646570091674015	40.0	38.0	41.0	35.0	41.0
35	38.64670152689978	40.0	38.0	41.0	35.0	41.0
36	38.67399010612838	40.0	38.0	41.0	35.0	41.0
37	38.65783635341232	40.0	38.0	41.0	35.0	41.0
38	38.52096831531698	40.0	38.0	41.0	34.0	41.0
39	38.48883011627738	40.0	38.0	41.0	34.0	41.0
40	38.32963051811039	40.0	38.0	41.0	34.0	41.0
41	38.36964556808861	40.0	38.0	41.0	34.0	41.0
42	38.32373035447881	40.0	38.0	41.0	34.0	41.0
43	38.287923342192606	40.0	38.0	41.0	34.0	41.0
44	38.20833890262256	40.0	38.0	41.0	33.0	41.0
45	38.07501246348305	40.0	38.0	41.0	33.0	41.0
46	37.979954896964635	40.0	37.0	41.0	33.0	41.0
47	37.88972185914365	40.0	37.0	41.0	33.0	41.0
48	37.85405601368333	40.0	37.0	41.0	33.0	41.0
49	37.75137836977173	40.0	37.0	41.0	33.0	41.0
50	37.65622067329541	40.0	37.0	41.0	33.0	41.0
51	36.64531788095932	39.0	35.0	40.0	30.0	41.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
8	1.0
9	1.0
10	0.0
11	2.0
12	1.0
13	0.0
14	10.0
15	19.0
16	62.0
17	128.0
18	364.0
19	836.0
20	1772.0
21	2946.0
22	4886.0
23	7887.0
24	11763.0
25	17375.0
26	24909.0
27	34208.0
28	46345.0
29	61272.0
30	79462.0
31	102744.0
32	131185.0
33	171191.0
34	229802.0
35	325301.0
36	501146.0
37	843851.0
38	1747807.0
39	4179826.0
40	1814.0
>>END_MODULE
>>Per base sequence content	warn
#Base	G	A	T	C
1	21.304454423454114	26.8327984083636	30.061868295841666	21.800878872340625
2	19.460702860715244	30.999648724409994	29.56056783769473	19.97908057718003
3	19.351345469928418	28.363698270682935	32.27853340330706	20.006422856081592
4	19.49198467894396	27.63258543055178	29.569713196847054	23.3057166936572
5	22.7472400947553	28.377041115189783	29.428499471679636	19.44721931837528
6	22.776458344765032	28.818163996456292	28.230398798628105	20.174978860150574
7	20.106365216869296	31.721416883458573	28.786635957019623	19.385581942652504
8	19.426501562449435	31.89320893768915	28.865719864048373	19.81456963581304
9	22.186934424022937	28.523812404765152	29.191599495176174	20.097653676035733
10	19.45126438107727	31.596207536807725	28.81444722869823	20.138080853416778
11	22.33289670105791	28.567147337363856	28.849398915407303	20.25055704617093
12	19.408797085116092	28.593141262031423	28.815127268224945	23.182934384627544
13	19.359072125930187	31.639765240975525	28.849422365046156	20.151740268048133
14	19.36314063827103	28.819406827315454	28.88023519049783	22.937217343915687
15	19.34524856382687	31.70829681052082	28.883107771257215	20.063346854395096
16	19.46385683714085	28.751297351269496	28.864054939689876	22.920790871899783
17	22.366113114491924	28.69796114770036	28.902547521865618	20.033378215942097
18	19.50393226993911	28.57203658706452	31.751596568661245	20.17243457433512
19	19.50298480197972	28.573150453389275	28.83969208596586	23.084172658665143
20	19.532392438700214	28.521413771335684	31.73466368011646	20.211530109847644
21	22.499747899356734	28.51035488735205	28.780454343987223	20.20944286930399
22	19.653094200731104	31.449786151791017	28.720992252875664	20.17612739460221
23	19.604901354311714	31.426250582137833	28.754876943214768	20.213971120335685
24	19.63140450673919	28.5060141288764	28.750464889090242	23.112116475294165
25	19.59407268168663	28.546241984327196	31.61352509510001	20.24616023888616
26	19.64708689997874	28.525857484992283	28.73468194338391	23.09237367164507
27	19.692925073483252	28.53674162642933	28.66561453120325	23.10471876888417
28	19.782413251700945	31.434614778441432	28.59626551892196	20.186706450935663
29	22.670613447698834	28.54587188404955	28.6131943246545	20.170320343597112
30	19.82157484128034	28.442570260290502	31.412637550877555	20.323217347551605
31	19.766679620831518	28.517131980737148	28.571344808831473	23.144843589599862
32	19.78570218254648	31.389507029593624	28.56539542725557	20.25939536060433
33	19.829404227142344	28.51142047116436	28.534665086376847	23.124510215316445
34	22.688977001598012	28.5366285198851	28.550956573451852	20.223437905065037
35	19.8539645929925	28.559343330846094	31.409503418402608	20.1771886577588
36	19.834564602556707	28.504415085458696	31.45236687816409	20.208653433820505
37	19.81267765666006	28.529998769838123	31.423271496492518	20.234052077009306
38	19.882534567847532	28.563455592323756	28.547122710128157	23.006887129700555
39	22.72831101898055	28.54957449547924	28.458650416498887	20.263464069041323
40	19.92344588065678	31.309806806225804	28.507349483968657	20.25939782914876
41	19.91100622278674	28.536228607558243	31.324686222298936	20.228078947356078
42	19.90248210314966	28.4353743092238	28.527919555651465	23.13422403197508
43	19.859349250487274	28.473216813081127	31.333440586936746	20.333993349494854
44	19.878565681728087	28.514030507528364	28.528984028466812	23.078419782276736
45	22.72650846376533	28.487297610072332	28.57631458919344	20.209879336968896
46	19.889000374799057	28.57847490089403	31.310239331947653	20.22228539235926
47	19.913025939776006	31.359865288121362	28.561896754508474	20.165212017594158
48	19.992145917548083	28.486093360861318	31.304862343075186	20.216898378515413
49	22.798612285509286	28.500757491709106	28.475073843420752	20.225556379360853
50	19.97577354930404	28.458972078827916	28.50715287833363	23.058101493534412
51	20.023528669452688	28.42160532797349	28.417007960599623	23.137858041974198
>>END_MODULE
>>Per base GC content	pass
#Base	%GC
1	43.10533329579474
2	39.43978343789527
3	39.35776832601001
4	42.79770137260116
5	42.19445941313058
6	42.95143720491561
7	39.49194715952179
8	39.241071198262475
9	42.28458810005867
10	39.58934523449405
11	42.58345374722884
12	42.591731469743635
13	39.51081239397832
14	42.30035798218672
15	39.408595418221964
16	42.384647709040635
17	42.39949133043402
18	39.67636684427423
19	42.58715746064487
20	39.74392254854786
21	42.709190768660726
22	39.82922159533332
23	39.8188724746474
24	42.74352098203336
25	39.84023292057279
26	42.73946057162381
27	42.79764384236742
28	39.969119702636604
29	42.840933791295946
30	40.14479218883194
31	42.911523210431376
32	40.04509754315081
33	42.95391444245879
34	42.91241490666305
35	40.0311532507513
36	40.04321803637721
37	40.046729733669366
38	42.88942169754809
39	42.991775088021875
40	40.18284370980554
41	40.13908517014282
42	43.03670613512474
43	40.19334259998213
44	42.95698546400482
45	42.936387800734224
46	40.111285767158314
47	40.07823795737016
48	40.209044296063496
49	43.02416866487014
50	43.03387504283845
51	43.161386711426886
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	7.0
1	11.5
2	16.0
3	37.5
4	59.0
5	148.0
6	237.0
7	574.0
8	911.0
9	1841.5
10	2772.0
11	4931.5
12	7091.0
13	11576.5
14	16062.0
15	24094.0
16	32126.0
17	45090.5
18	58055.0
19	76845.0
20	95635.0
21	120073.5
22	144512.0
23	172996.5
24	201481.0
25	231928.0
26	293027.0
27	323679.0
28	353467.5
29	383256.0
30	410106.5
31	436957.0
32	457961.5
33	478966.0
34	496269.0
35	513572.0
36	529059.0
37	544546.0
38	553110.0
39	561674.0
40	563402.5
41	565131.0
42	558521.0
43	551911.0
44	537067.5
45	522224.0
46	494995.0
47	467766.0
48	438877.5
49	409989.0
50	381572.0
51	353155.0
52	429348.5
53	505542.0
54	365367.5
55	225193.0
56	199280.5
57	173368.0
58	157570.0
59	141772.0
60	129943.5
61	118115.0
62	108340.0
63	98565.0
64	90822.0
65	83079.0
66	76657.0
67	70235.0
68	63404.0
69	56573.0
70	50061.0
71	43549.0
72	37421.0
73	31293.0
74	26145.5
75	16809.0
76	12620.0
77	9853.5
78	7087.0
79	5372.5
80	3658.0
81	2688.0
82	1718.0
83	1260.5
84	803.0
85	567.5
86	332.0
87	242.0
88	152.0
89	106.5
90	61.0
91	41.0
92	21.0
93	14.0
94	7.0
95	8.0
96	9.0
97	5.0
98	1.0
99	0.5
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.05107331341990002
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	4.924424158943529E-4
20	1.4069783311267223E-4
21	0.006753495989408267
22	0.002380138343489372
23	9.379855540844815E-5
24	0.0
25	0.0
26	0.06997372233470232
27	0.07698516435148382
28	0.08940174812367714
29	0.694449329785872
30	0.10206455310381765
31	0.01657889466844321
32	0.081417146094533
33	0.0259118509315838
34	0.0022628901492288116
35	0.016356123099348148
36	0.011666195328925738
37	0.018560389151446678
38	0.0012780053174401061
39	0.01081028351082365
40	0.02812784180310839
41	0.01059923676115464
42	0.0266856890137035
43	0.00987229795673917
44	0.029265149287435826
45	0.00241531280176754
46	0.019697696635774115
47	0.012733153896696837
48	0.010165418442390568
49	0.02450487260045708
50	0.031633562811499136
51	0.026931910221650677
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
51	8528916.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Duplicate Percentage	15.056330420356126
#Duplication Level	Relative count
1	100.0
2	8.510807419561798
3	1.261575322632843
4	0.4962271971112083
5	0.40254586127213576
6	0.3434982314099325
7	0.2838828358759773
8	0.28615389856298507
9	0.29807697766977614
10++	1.6703666062942502
>>END_MODULE
>>Overrepresented sequences	fail
#Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGATCTCGTATGCC	222887	2.613309827415348	TruSeq Adapter, Index 9 (97% over 36bp)
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	3079150	3.6362925	3.8350902	14
TTTTT	3136875	3.54688	3.870868	1
CACGT	767240	2.4767337	38.54087	14
GAAGA	1000635	2.428508	30.445347	6
GAGCA	709855	2.38931	41.16677	9
GGAAG	677120	2.3558493	42.64405	5
CTCCA	729470	2.2781196	37.53834	24
CGGAA	662180	2.2288399	41.244995	4
TCCAG	682990	2.2047656	38.68574	25
CTGAA	921460	2.1447942	28.619593	19
TTTCG	908090	2.0772395	27.187466	35
TCTCG	641395	2.0525696	37.746735	41
TCGGA	589300	1.9663625	40.667847	3
AGAGC	575645	1.9375707	40.75824	8
CACAC	611390	1.9260302	37.98773	12
AGCAC	589525	1.9196676	39.381947	10
GATCG	572465	1.9101876	40.260456	1
TTCGA	819490	1.890937	26.98858	36
GTTTC	823355	1.8834097	26.993305	34
GCACA	576780	1.878166	39.271095	11
ATCGG	560905	1.8716145	40.44851	2
CGATC	560020	1.8078051	36.91405	38
AAGAG	730775	1.7735668	29.719467	7
TCTGA	765800	1.7670497	28.05709	18
CTCGT	539365	1.7260568	37.25508	42
CGTCT	536730	1.7176243	38.215736	16
CCAGT	531955	1.7172083	38.04011	26
TCGAT	733025	1.6914228	26.827105	37
GTCTG	508605	1.6824107	39.34186	17
ATGCC	518335	1.6732414	37.40002	47
GTCAC	513380	1.6572461	37.97219	29
TGAAC	703640	1.6377953	28.162592	20
ACGTC	506565	1.6352466	38.46754	15
CGTTT	712085	1.6288815	26.990149	33
ACACG	497780	1.6209189	38.81778	13
TCACG	501685	1.6194936	37.7857	30
ACTCC	504240	1.574731	37.00371	23
CAGTC	480215	1.5501859	37.798195	27
ATCTC	680075	1.5181377	26.15598	40
AACTC	664345	1.4959732	27.080439	22
GAACT	641105	1.4922388	27.960363	21
GATCT	614940	1.4189469	26.817175	39
AGTCA	564560	1.3140721	27.428549	28
ACGTT	550395	1.2700121	26.891773	32
TCGTA	531685	1.2268398	26.770666	43
TATGC	488000	1.1260384	26.596786	46
GTATG	470720	1.1227293	27.508774	45
CGTAT	483430	1.1154934	26.649801	44
>>END_MODULE