##FastQC	0.10.1
>>Basic Statistics	pass
#Measure	Value	
Filename	LW188_CAGATC_L002_R1_001.fastq.gz	
File type	Conventional base calls	
Encoding	Sanger / Illumina 1.9	
Total Sequences	6425498	
Filtered Sequences	0	
Sequence length	51	
%GC	39	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.80803137749012	34.0	31.0	34.0	31.0	34.0
2	32.99719741567113	34.0	33.0	34.0	31.0	34.0
3	33.05739430624677	34.0	33.0	34.0	31.0	34.0
4	36.39008540660973	37.0	37.0	37.0	35.0	37.0
5	36.33155437913139	37.0	37.0	37.0	35.0	37.0
6	36.331277046541764	37.0	37.0	37.0	35.0	37.0
7	36.317898628246404	37.0	37.0	37.0	35.0	37.0
8	36.304651250377795	37.0	37.0	37.0	35.0	37.0
9	38.09806617323669	39.0	38.0	39.0	37.0	39.0
10	38.06399363909225	39.0	38.0	39.0	37.0	39.0
11	38.06023424176616	39.0	38.0	39.0	37.0	39.0
12	38.04630940667945	39.0	38.0	39.0	37.0	39.0
13	38.027114629869935	39.0	38.0	39.0	35.0	39.0
14	39.56467358638972	41.0	40.0	41.0	37.0	41.0
15	39.52171660468963	41.0	39.0	41.0	37.0	41.0
16	39.48847995906309	41.0	39.0	41.0	37.0	41.0
17	39.468417856483654	41.0	39.0	41.0	37.0	41.0
18	39.41704362836935	41.0	39.0	41.0	37.0	41.0
19	39.467327201720394	41.0	39.0	41.0	37.0	41.0
20	39.44574303812716	41.0	39.0	41.0	37.0	41.0
21	39.41457704912522	41.0	39.0	41.0	37.0	41.0
22	39.34491770132058	40.0	39.0	41.0	36.0	41.0
23	39.283630778501525	40.0	39.0	41.0	36.0	41.0
24	39.214112898330995	40.0	39.0	41.0	36.0	41.0
25	39.19877525446277	40.0	39.0	41.0	36.0	41.0
26	39.074954345951085	40.0	39.0	41.0	36.0	41.0
27	38.984037813100244	40.0	39.0	41.0	36.0	41.0
28	38.8697828557413	40.0	38.0	41.0	35.0	41.0
29	38.5966981858838	40.0	38.0	41.0	35.0	41.0
30	38.59539649689409	40.0	38.0	41.0	35.0	41.0
31	38.83087396494404	40.0	38.0	41.0	35.0	41.0
32	38.81946270934953	40.0	38.0	41.0	35.0	41.0
33	38.83512266286598	40.0	38.0	41.0	35.0	41.0
34	38.976059287544714	40.0	39.0	41.0	36.0	41.0
35	39.03497612169516	40.0	39.0	41.0	36.0	41.0
36	39.02665614400627	40.0	39.0	41.0	35.0	41.0
37	38.95814799101953	40.0	39.0	41.0	35.0	41.0
38	38.92158989077578	40.0	39.0	41.0	35.0	41.0
39	38.881730723439645	40.0	39.0	41.0	35.0	41.0
40	38.8289832165538	40.0	38.0	41.0	35.0	41.0
41	38.80882929229765	40.0	38.0	41.0	35.0	41.0
42	38.75370189205568	40.0	38.0	41.0	35.0	41.0
43	38.69716588504113	40.0	38.0	41.0	35.0	41.0
44	38.62488603996142	40.0	38.0	41.0	35.0	41.0
45	38.53435873764182	40.0	38.0	41.0	34.0	41.0
46	38.47363037075103	40.0	38.0	41.0	34.0	41.0
47	38.38838919567012	40.0	38.0	41.0	34.0	41.0
48	38.3155982618001	40.0	38.0	41.0	34.0	41.0
49	38.25275394996621	40.0	38.0	41.0	34.0	41.0
50	38.14081787901887	40.0	37.0	41.0	34.0	41.0
51	37.16749067543092	39.0	36.0	40.0	32.0	41.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	1.0
11	1.0
12	6.0
13	6.0
14	4.0
15	21.0
16	28.0
17	78.0
18	218.0
19	459.0
20	839.0
21	1520.0
22	2510.0
23	4247.0
24	6316.0
25	9375.0
26	13577.0
27	19408.0
28	26218.0
29	35577.0
30	47209.0
31	61621.0
32	80010.0
33	105145.0
34	144178.0
35	205419.0
36	316614.0
37	553545.0
38	1257168.0
39	3532271.0
40	1908.0
>>END_MODULE
>>Per base sequence content	warn
#Base	G	A	T	C
1	18.827689151065975	26.546301663601724	32.44467882398973	22.18133036134257
2	19.08057554449476	30.467397235202625	29.928341740982567	20.523685479320047
3	19.93700721718379	30.039601599751492	30.666136694774476	19.357254488290245
4	19.379307253694577	28.880407401885428	30.31414841308798	21.426136931332014
5	20.90367159090237	29.422777814264357	31.01485674729025	18.658693847543024
6	20.88370426696888	30.052907961375137	29.438465314283814	19.624922457372175
7	19.86210251719011	31.233999294685017	30.21084124530114	18.693056942823734
8	19.271191120127966	31.69801002194694	29.855071155574247	19.175727702350855
9	20.507640030391418	29.647165091328333	30.235493031045994	19.609701847234255
10	19.24355123914131	31.059164597047573	29.901853521703686	19.79543064210743
11	20.6733392493469	29.520544555457022	29.912265166061836	19.89385102913424
12	19.25324698568111	29.55109471670523	29.851802926403526	21.34385537121014
13	19.150904723649436	31.181458620016688	29.86573180786921	19.801904848464662
14	19.14877259319044	29.84593567689228	29.86973149785433	21.135560232062947
15	19.079003681893607	31.275552494141312	29.95388061750233	19.691563206462753
16	19.07028840410502	29.81214841246546	29.992492410704973	21.12507077272454
17	20.5423610745813	29.73204567179073	30.046184747081085	19.679408506546885
18	19.138002999923117	29.689216306658256	31.49153575333772	19.68124494008091
19	19.15987280496429	29.627332614520352	30.02291838899569	21.189876191519666
20	19.198371861605125	29.67363774761116	31.419292325668764	19.70869806511495
21	20.63910865167721	29.611646103012728	30.001413316680686	19.747831928629374
22	19.24713971452783	31.038791563918423	30.014605878613242	19.699462842940505
23	19.2404697659232	31.13497195081222	29.97892147814846	19.64563680511612
24	19.261623824357738	29.674866592461445	29.996168346244545	21.067341236936272
25	19.17804658876246	29.696032898928614	31.450558384735317	19.675362127573614
26	19.204135109142744	29.78951854571465	29.964369373424983	21.041976971717624
27	19.277721515042927	29.764875434305033	29.9040088496954	21.05339420095664
28	19.22826712099626	31.20116503504937	29.92297349454887	19.64759434940549
29	20.723790475847135	29.78356192940782	29.886761281747244	19.605886312997807
30	19.374083256087367	29.79326548155666	31.230056047221545	19.602595215134432
31	19.280411165152156	29.74117537897535	29.88851381383453	21.08989964203797
32	19.294071267575568	31.188231820239352	29.86626714316544	19.651429769019632
33	19.333436169297052	29.771291675221196	29.891021377479955	21.004250778001797
34	19.29930622020368	29.836749363118148	29.871054675102705	20.99288974157547
35	19.300412240061814	31.294739503008213	29.880041940025016	19.524806316904954
36	20.731609735077562	29.87969704291166	29.87726850421943	19.51142471779135
37	19.297399968861903	31.279931496185583	29.900747314339092	19.521921220613418
38	19.34610663845171	29.89370209504741	31.29031735907543	19.469873907425445
39	19.341001373821797	29.87201634265787	29.872950279978845	20.91403200354149
40	19.321978964731528	31.250728737256534	29.85278300963778	19.574509288374156
41	19.335137421929794	29.85451695076444	31.253033231610793	19.557312395694968
42	19.370206624440936	29.798309901949782	29.877399479886012	20.954083993723266
43	19.314786060358415	29.815313369525033	31.268974373941976	19.600926196174576
44	19.38413548832471	29.858735318816432	29.84464854271912	20.912480650139738
45	20.76860869761494	29.86658509685248	29.87123955762386	19.49356664790872
46	19.320997310980616	29.923983640177298	31.26771503399216	19.487304014849922
47	19.370325884736506	31.313990504723904	29.842460846344345	19.473222764195246
48	19.41876771631969	29.89708343919535	31.249657505243285	19.43449133924168
49	20.765709031004036	29.863533182499076	29.86202338719619	19.5087343993007
50	19.424433556362946	29.860809101575548	29.800384711290643	20.914372630770863
51	19.420392221196856	29.815528687072096	29.826315026803197	20.93776406492785
>>END_MODULE
>>Per base GC content	pass
#Base	%GC
1	41.00901951240854
2	39.60426102381481
3	39.294261705474035
4	40.80544418502659
5	39.5623654384454
6	40.508626724341056
7	38.55515946001384
8	38.44691882247882
9	40.11734187762567
10	39.03898188124874
11	40.56719027848114
12	40.59710235689125
13	38.9528095721141
14	40.28433282525339
15	38.770566888356356
16	40.19535917682956
17	40.221769581128186
18	38.819247940004026
19	40.34974899648396
20	38.90706992672008
21	40.386940580306586
22	38.94660255746834
23	38.88610657103932
24	40.32896506129401
25	38.85340871633608
26	40.24611208086037
27	40.331115715999566
28	38.87586147040176
29	40.32967678884494
30	38.976678471221796
31	40.37031080719013
32	38.945501036595196
33	40.33768694729885
34	40.29219596177915
35	38.82521855696677
36	40.24303445286891
37	38.819321189475325
38	38.81598054587716
39	40.25503337736329
40	38.89648825310569
41	38.89244981762476
42	40.324290618164206
43	38.91571225653299
44	40.296616138464444
45	40.26217534552366
46	38.80830132583054
47	38.84354864893175
48	38.85325905556137
49	40.274443430304736
50	40.338806187133805
51	40.358156286124704
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	15.0
1	20.5
2	26.0
3	75.0
4	124.0
5	257.0
6	390.0
7	833.5
8	1277.0
9	2477.5
10	3678.0
11	6419.0
12	9160.0
13	14216.0
14	19272.0
15	26958.5
16	34645.0
17	47115.0
18	59585.0
19	76431.5
20	93278.0
21	114777.5
22	136277.0
23	159951.5
24	183626.0
25	207500.0
26	254240.0
27	277106.0
28	297803.5
29	318501.0
30	336696.0
31	354891.0
32	369694.5
33	384498.0
34	396110.0
35	407722.0
36	418923.0
37	430124.0
38	431743.5
39	433363.0
40	434242.0
41	435121.0
42	427364.5
43	419608.0
44	404357.0
45	389106.0
46	367836.5
47	346567.0
48	323725.5
49	300884.0
50	279526.5
51	258169.0
52	272288.5
53	286408.0
54	222798.0
55	159188.0
56	139385.5
57	119583.0
58	107700.0
59	95817.0
60	84304.0
61	72791.0
62	62417.0
63	52043.0
64	43691.0
65	35339.0
66	30196.5
67	25054.0
68	21398.0
69	17742.0
70	15083.0
71	12424.0
72	10413.0
73	8402.0
74	6846.5
75	4279.5
76	3268.0
77	2582.5
78	1897.0
79	1453.0
80	1009.0
81	744.5
82	480.0
83	342.5
84	205.0
85	149.0
86	93.0
87	67.5
88	42.0
89	33.5
90	25.0
91	16.5
92	8.0
93	5.0
94	2.0
95	1.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.04461910967834711
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0
8	0.0
9	0.0
10	0.0
11	0.0
12	0.0
13	0.0
14	0.0
15	0.0
16	0.0
17	0.0
18	0.0
19	0.0014006696445940845
20	0.0
21	0.013913318469634572
22	4.6688988153136144E-5
23	0.0
24	0.0011516617077773584
25	0.0
26	0.08933159733300049
27	0.11202244557542466
28	0.12196720005204266
29	0.709874938876333
30	0.1364252233834638
31	0.03409852434784043
32	0.12221620798885939
33	0.015983196944423607
34	0.013026227694724985
35	0.016901413711435286
36	0.02928955856806741
37	0.03887636413551136
38	0.008341765883360325
39	0.016870287719333195
40	0.026690538227542828
41	0.012948412714469757
42	0.0176951265100386
43	0.02136799357808531
44	0.016076574920729877
45	0.024169332867273477
46	0.0190335441704285
47	0.009633494555597092
48	0.031779637936234666
49	0.012232514896121672
50	0.014629216287982659
51	0.010971912215986994
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
51	6425498.0
>>END_MODULE
>>Sequence Duplication Levels	pass
#Total Duplicate Percentage	19.94625059211353
#Duplication Level	Relative count
1	100.0
2	12.259388962685666
3	2.8957855331481706
4	1.359739161936964
5	0.848931288491728
6	0.5023547880690737
7	0.33510445598357685
8	0.25661152034778406
9	0.19864750633981404
10++	2.1017992996014976
>>END_MODULE
>>Overrepresented sequences	fail
#Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC	80979	1.260275857217604	TruSeq Adapter, Index 7 (100% over 51bp)
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	2786050	3.7494059	3.940054	3
TTTTT	2855715	3.7298975	4.0271597	1
TTTTC	1557080	3.063837	3.4103289	1
GAAAA	1477500	3.0565476	3.2512226	2
GAAGA	695135	2.2105634	15.839108	6
CTCCA	474755	2.132888	20.731007	24
TCCAG	437760	2.018786	21.161692	25
GAGCA	423550	2.0170324	22.233793	9
GGAAG	409370	2.001151	23.129204	5
CGGAA	418070	1.9909354	22.502092	4
CACCA	436820	1.9742372	20.374052	31
CTGAA	631645	1.945149	14.9916	19
CCAGA	388785	1.8036906	20.641766	33
TCTCG	385480	1.7670863	20.691963	41
TCGGA	356780	1.688925	22.017828	3
TCATC	540300	1.6112418	13.688668	38
CACAC	356450	1.6109996	20.738121	12
TCACC	355220	1.5958642	19.905846	30
AGAGC	326415	1.5544554	21.798937	8
TCTGA	502020	1.5367473	14.454426	18
ATCGG	317650	1.5036914	21.657793	2
GCACA	323470	1.5006747	21.230894	11
AAGAG	468195	1.4888829	15.06574	7
GATCG	307000	1.4532765	21.379467	1
AGCAC	308645	1.4318969	21.140501	10
CTCGT	312275	1.4315057	20.313204	42
CGTCT	308390	1.4136964	20.715092	16
CCAGT	305605	1.4093364	20.514053	26
TGAAC	451725	1.3910859	14.40585	20
ACCAG	293155	1.3600342	20.262043	32
CACGT	293030	1.3513452	20.81521	14
GTCTG	287100	1.350967	21.205126	17
CATCT	441220	1.315773	13.454437	39
ATCTC	434825	1.2967024	13.579215	40
GTCAC	280970	1.295729	20.31451	29
ACGTC	276415	1.274723	20.654282	15
ACACG	273165	1.2672944	20.953184	13
ACTCC	280575	1.2605134	19.97256	23
AACTC	418460	1.2553881	13.804623	22
GATCA	404860	1.246765	13.768049	36
GAACT	403010	1.241068	14.220758	21
ATGCC	267150	1.2319963	20.149046	47
CAGAT	396790	1.2219136	13.699462	34
CAGTC	259835	1.1982622	20.311241	27
AGATC	382770	1.1787391	13.673578	35
ATCAT	529205	1.0538416	9.192067	37
AGTCA	329475	1.0146172	13.738659	28
TCGTA	284555	0.8710592	13.447335	43
GTATG	260090	0.8172611	13.744141	45
TATGC	265380	0.8123621	13.36446	46
CGTAT	242425	0.74209386	13.323209	44
>>END_MODULE