FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Undetermined_L003_R1_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 3783211 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
![[FAIL]](Icons/error.png)
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 845210 | 3.6218138 | 4.3359866 | 18 |
| TGTTT | 402375 | 2.0189102 | 14.563446 | 6 |
| GTTTG | 314055 | 1.8450844 | 16.438044 | 7 |
| TTTGA | 360675 | 1.6673987 | 13.124675 | 8 |
| TGTGT | 278330 | 1.6351988 | 16.128048 | 4 |
| TTTGT | 312980 | 1.5703722 | 13.996615 | 2 |
| CTTTG | 252125 | 1.5251797 | 16.522655 | 1 |
| GTGTT | 246190 | 1.4463751 | 16.129425 | 5 |
| TTGAG | 256045 | 1.3860033 | 9.217945 | 9 |
| TGAGG | 205830 | 1.3046113 | 5.2696238 | 10 |
| TTGTG | 209460 | 1.2305851 | 15.975301 | 3 |