140701_JD_D_15_TGACCA_L006_R1_001.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Kmer Content

Basic Statistics

Measure	Value
Filename	140701_JD_D_15_TGACCA_L006_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28082252
Filtered Sequences	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per base GC content

Per base GC content graph

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
TGTGT	5001785	3.2182586	35.068977	4
TTTTT	8774290	3.1822069	3.8452485	17
TGTTT	4828280	2.3323765	26.422468	6
GTTTG	3580280	2.303631	34.324505	7
CTTTG	3243405	2.186028	35.829945	1
GAGGG	1805445	2.1288755	11.154939	11
GTGTT	3154995	2.0299933	34.25511	5
TTTGA	4012750	2.0023448	26.83942	8
TTTGT	3961235	1.9135367	26.066515	2
TTGTG	2907670	1.8708588	34.20751	3
TGAGG	2039580	1.8055811	13.691679	10
TTGAG	2573955	1.7107534	21.906559	9
AGGGG	1334860	1.5739892	6.1175103	12
TGAGC	1531315	1.4200362	5.6313176	10
TGAGT	1795540	1.1933879	6.6652927	10
GAGTG	1334025	1.1809736	5.417924	11
TTGAT	2038350	1.0171278	6.018059	9
TTGAC	1334960	0.92942286	5.2695074	9