##FastQC	0.10.1
>>Basic Statistics	pass
#Measure	Value	
Filename	140701_JD_C_9_ACTTGA_L003_R1_001.fastq.gz	
File type	Conventional base calls	
Encoding	Sanger / Illumina 1.9	
Total Sequences	24153543	
Filtered Sequences	0	
Sequence length	51	
%GC	43	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	33.068948766646784	34.0	33.0	34.0	31.0	34.0
2	33.25885336987621	34.0	34.0	34.0	31.0	34.0
3	33.27061487418223	34.0	34.0	34.0	31.0	34.0
4	36.570531660717435	37.0	37.0	37.0	35.0	37.0
5	36.500266234233216	37.0	37.0	37.0	35.0	37.0
6	36.45274591806262	37.0	37.0	37.0	35.0	37.0
7	36.46953815429894	37.0	37.0	37.0	35.0	37.0
8	36.43739347059767	37.0	37.0	37.0	35.0	37.0
9	38.2839924560964	39.0	39.0	39.0	37.0	39.0
10	38.247868480413	39.0	39.0	39.0	37.0	39.0
11	38.2234881648626	39.0	39.0	39.0	37.0	39.0
12	38.18218432798865	39.0	39.0	39.0	37.0	39.0
13	38.207168240286734	39.0	39.0	39.0	37.0	39.0
14	39.768338127454015	41.0	40.0	41.0	38.0	41.0
15	39.757576476461445	41.0	40.0	41.0	38.0	41.0
16	39.693272949645525	41.0	40.0	41.0	38.0	41.0
17	39.69954718444412	41.0	40.0	41.0	38.0	41.0
18	39.695841434111756	41.0	40.0	41.0	37.0	41.0
19	39.709866829889094	41.0	40.0	41.0	38.0	41.0
20	39.69533517298063	41.0	40.0	41.0	37.0	41.0
21	39.65368347823754	41.0	40.0	41.0	37.0	41.0
22	39.62151635476418	41.0	40.0	41.0	37.0	41.0
23	39.59517789998759	41.0	40.0	41.0	37.0	41.0
24	39.56762310191925	41.0	40.0	41.0	37.0	41.0
25	39.51829232671994	41.0	40.0	41.0	37.0	41.0
26	39.44627825408471	41.0	39.0	41.0	37.0	41.0
27	39.39731798353559	41.0	39.0	41.0	37.0	41.0
28	39.33424607727322	41.0	39.0	41.0	36.0	41.0
29	39.30316575087969	41.0	39.0	41.0	36.0	41.0
30	39.2042740479109	41.0	39.0	41.0	36.0	41.0
31	39.1769303989895	40.0	39.0	41.0	36.0	41.0
32	39.10917131287944	40.0	39.0	41.0	36.0	41.0
33	39.042735966313515	40.0	39.0	41.0	36.0	41.0
34	38.992190876510335	40.0	39.0	41.0	35.0	41.0
35	38.93937100656413	40.0	39.0	41.0	35.0	41.0
36	38.88491564156861	40.0	38.0	41.0	35.0	41.0
37	39.047706955455766	40.0	39.0	41.0	36.0	41.0
38	39.0695004455454	40.0	39.0	41.0	36.0	41.0
39	39.04617985030188	40.0	39.0	41.0	35.0	41.0
40	39.02121092545305	40.0	39.0	41.0	35.0	41.0
41	38.9875269230688	40.0	39.0	41.0	35.0	41.0
42	38.93674306912241	40.0	39.0	41.0	35.0	41.0
43	38.905115907840106	40.0	39.0	41.0	35.0	41.0
44	38.84997182400942	40.0	38.0	41.0	35.0	41.0
45	38.80561071309497	40.0	38.0	41.0	35.0	41.0
46	38.74138655351722	40.0	38.0	41.0	35.0	41.0
47	38.674286542558164	40.0	38.0	41.0	35.0	41.0
48	38.62683830691009	40.0	38.0	41.0	35.0	41.0
49	38.57969433304257	40.0	38.0	41.0	35.0	41.0
50	38.68199468707345	40.0	38.0	41.0	35.0	41.0
51	38.41739367181039	40.0	38.0	41.0	34.0	41.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
8	5.0
9	5.0
10	7.0
11	35.0
12	77.0
13	123.0
14	237.0
15	357.0
16	613.0
17	907.0
18	1477.0
19	2349.0
20	3835.0
21	6342.0
22	10256.0
23	15687.0
24	22819.0
25	31687.0
26	43341.0
27	58643.0
28	77139.0
29	99966.0
30	130662.0
31	168717.0
32	221694.0
33	296360.0
34	424254.0
35	653726.0
36	1002837.0
37	1705645.0
38	4154938.0
39	1.5002762E7
40	16041.0
>>END_MODULE
>>Per base sequence content	warn
#Base	G	A	T	C
1	19.471427108041578	27.510144509347096	28.68499167138314	24.333436711228185
2	21.39644341719146	27.189374556690048	32.74224650124158	18.671935524876908
3	20.435067124765144	26.18674507826806	34.02613854387225	19.35204925309455
4	21.260947099976182	26.00592799159941	33.37564182612878	19.35748308229563
5	26.221836301968715	26.40565214464375	28.463732949588056	18.90877860379948
6	21.447429058337324	26.019246948573965	32.77346101977668	19.759862973312032
7	26.16407456247723	26.699304528532313	27.84907787648379	19.28754303250666
8	21.231096406850124	26.69617869312175	32.412329735641684	19.660395164386443
9	20.59352291243756	26.85588419519937	32.86635694534395	19.68423594701911
10	21.10013425359584	26.653000762662437	32.629887880217	19.61697710352473
11	26.00867293050961	26.54030094052868	27.777038755763495	19.67398737319821
12	20.99281336382616	31.700119593720842	27.452041824929136	19.855025217523863
13	23.80294683889647	27.074367516185927	28.73688551613318	20.385800128784417
14	22.88160258890651	27.37528752540313	29.12174118900609	20.621368696684268
15	23.14437678977366	27.405507341096914	28.720179892448904	20.729935976680522
16	23.03423973865863	27.4002327526028	28.659654610505797	20.905872898232776
17	23.006753087942418	27.544360676195623	28.572586638738674	20.87629959712329
18	22.550529765184145	27.491188935139952	28.955614060226708	21.002667239449195
19	22.217172064908993	27.885366875688806	29.154193369235454	20.74326769016675
20	21.92490774844347	27.89920495588772	29.314919138628586	20.860968157040226
21	22.098112065795068	27.90802989027324	29.064791860970455	20.929066182961233
22	22.01648014951678	28.013736949481903	29.04997829924993	20.919804601751387
23	22.06338010121331	28.058537830247097	28.921446431275115	20.95663563726448
24	21.916619023552776	28.110025100665354	28.91685083219468	21.056505043587187
25	22.015039367102375	28.151108100372685	28.833066022653487	21.00078650987145
26	21.966436765732826	28.149250695859607	28.772040177637248	21.11227236077032
27	22.00252473185592	28.127972190687228	28.643091185961527	21.226411891495324
28	21.93879371943725	28.224478123419665	28.693243947443975	21.14348420969911
29	22.047474057892426	28.144979443017416	28.62578301002848	21.181763489061677
30	21.961109504949405	28.140004159229687	28.655809087134372	21.243077248686536
31	22.05655451212624	28.107842843787132	28.54247786302607	21.293124781060563
32	22.046393975716406	28.236684703077803	28.484589958116903	21.232331363088893
33	22.03821526834589	28.140498442561068	28.44934892283437	21.37193736625867
34	22.01062739540874	28.213593068291427	28.454782272040802	21.32099726425903
35	22.05107338536153	28.13905480382692	28.413943172734683	21.39592863807687
36	22.016287073678036	28.12900946254379	28.478887049275286	21.375816414502882
37	22.085722589828453	28.110532491266188	28.44217302343452	21.36157189547084
38	22.09736028944492	28.127086051337162	28.42635335941237	21.349200299805542
39	22.023557043225864	28.129194966745814	28.400711773151727	21.446536216876595
40	22.022625908389102	28.192194523656415	28.38115916419508	21.404020403759404
41	22.067078021563322	28.087191450188513	28.41065161737329	21.43507891087488
42	21.990017395074545	28.09747551568939	28.379479923126144	21.533027166109918
43	22.03693800655861	28.12366112188608	28.370619182530604	21.46878168902471
44	22.02444957486858	28.097120941061167	28.352347603776295	21.526081880293958
45	22.099772277715115	28.060723844944818	28.334141289333825	21.505362588006243
46	22.002300704114496	28.120555603813518	28.374486794509874	21.502656897562108
47	22.04837915962178	28.21375307833768	28.248464464177346	21.489403297863188
48	21.98489833083742	28.088716292706202	28.346886033732023	21.579499342724358
49	22.11877156076026	28.095637977418054	28.244038566101874	21.541551895719813
50	21.99959795216459	28.082892243520085	28.271287470206126	21.646222334109204
51	22.0452926201066	28.07951410832747	28.233547571634688	21.641645699931235
>>END_MODULE
>>Per base GC content	pass
#Base	%GC
1	43.80486381926976
2	40.06837894206837
3	39.7871163778597
4	40.61843018227181
5	45.1306149057682
6	41.20729203164935
7	45.45161759498389
8	40.891491571236564
9	40.277758859456675
10	40.717111357120565
11	45.68266030370782
12	40.84783858135002
13	44.18874696768089
14	43.50297128559078
15	43.87431276645418
16	43.940112636891406
17	43.88305268506571
18	43.55319700463334
19	42.96043975507574
20	42.78587590548369
21	43.0271782487563
22	42.93628475126817
23	43.02001573847779
24	42.97312406713996
25	43.01582587697382
26	43.07870912650315
27	43.228936623351245
28	43.08227792913636
29	43.2292375469541
30	43.204186753635945
31	43.349679293186796
32	43.278725338805295
33	43.41015263460456
34	43.331624659667774
35	43.447002023438394
36	43.392103488180915
37	43.447294485299295
38	43.44656058925047
39	43.47009326010246
40	43.426646312148506
41	43.5021569324382
42	43.52304456118446
43	43.505719695583316
44	43.55053145516254
45	43.605134865721354
46	43.50495760167661
47	43.53778245748497
48	43.56439767356178
49	43.66032345648007
50	43.645820286273796
51	43.68693832003784
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	27015.0
1	16188.0
2	5361.0
3	6936.5
4	8512.0
5	15686.5
6	22861.0
7	37511.5
8	52162.0
9	39058.5
10	25955.0
11	25954.5
12	25954.0
13	32590.5
14	39227.0
15	53993.0
16	68759.0
17	94519.5
18	120280.0
19	152490.0
20	184700.0
21	222967.5
22	261235.0
23	313558.0
24	365881.0
25	430946.0
26	573476.5
27	650942.0
28	719057.0
29	787172.0
30	852489.0
31	917806.0
32	996418.5
33	1075031.0
34	1147232.0
35	1219433.0
36	1314236.5
37	1409040.0
38	1474238.5
39	1539437.0
40	1600094.5
41	1660752.0
42	1688973.0
43	1717194.0
44	1725942.0
45	1734690.0
46	1706700.0
47	1678710.0
48	1625791.0
49	1572872.0
50	1499920.0
51	1426968.0
52	1320959.5
53	1214951.0
54	1112232.5
55	1009514.0
56	904671.0
57	799828.0
58	704144.0
59	608460.0
60	527716.0
61	446972.0
62	377409.5
63	307847.0
64	258176.0
65	208505.0
66	172944.5
67	137384.0
68	116635.0
69	95886.0
70	82216.5
71	68547.0
72	57640.0
73	46733.0
74	38720.5
75	25618.0
76	20528.0
77	18510.5
78	16493.0
79	15627.5
80	14762.0
81	12835.0
82	10908.0
83	9427.5
84	7947.0
85	6698.5
86	5450.0
87	5603.5
88	5757.0
89	3760.0
90	1763.0
91	1107.5
92	452.0
93	299.0
94	146.0
95	89.5
96	33.0
97	20.0
98	7.0
99	4.5
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.25133786790617013
2	0.011729128103483618
3	0.011157783352943292
4	0.0
5	8.69437663865711E-5
6	0.0
7	0.0
8	0.0
9	8.280358703482963E-6
10	0.0
11	0.0
12	4.181581145258896E-4
13	0.0
14	1.0350448379353704E-4
15	0.0
16	0.0
17	0.0
18	4.38859011284597E-4
19	0.0011592502184876148
20	0.0012089323707085125
21	0.0
22	0.0
23	0.0
24	0.0
25	0.0
26	0.005800391271789816
27	0.0019997066268911358
28	0.004906112531813655
29	0.001805118197359286
30	1.324857392557274E-4
31	7.203912072030178E-4
32	0.0015070252840338992
33	4.4713936998808004E-4
34	0.0012668948816328934
35	4.2229829387763115E-4
36	0.002169453980312536
37	0.0011716707565428393
38	0.0022936593608647807
39	0.0014159413382955866
40	0.001436642235054294
41	1.1592502184876147E-4
42	0.00301819074741954
43	0.0035564140631459324
44	0.003701320340456884
45	0.0
46	0.0038793480525817683
47	3.519152448980259E-4
48	2.2356968499404002E-4
49	0.0
50	0.009058712421610363
51	0.004136039172389741
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
51	2.4153543E7
>>END_MODULE
>>Sequence Duplication Levels	warn
#Total Duplicate Percentage	20.90260358941453
#Duplication Level	Relative count
1	100.0
2	10.830526807443643
3	2.9904864918016667
4	1.3803190835566264
5	0.8370412252021928
6	0.5985889525307898
7	0.42036431574030825
8	0.3761154403992232
9	0.26057671034194546
10++	5.219523587108828
>>END_MODULE
>>Overrepresented sequences	warn
#Sequence	Count	Percentage	Possible Source
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27739	0.11484443503795695	No Hit
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
TTTTT	9264165	3.8796535	4.9007897	16
TGTGT	5334975	3.8551264	46.084595	4
AAAAA	5846790	3.119271	3.2369685	46
TGTTT	4787910	2.6338584	35.095196	6
GTTTG	3613750	2.6113455	45.171577	7
CTTTG	3310140	2.5401418	48.03999	1
GTGTT	3365035	2.4316206	45.22509	5
TTTGA	3975460	2.2954278	36.28045	8
TTGTG	3105835	2.2443192	45.19541	3
TTTGT	3952200	2.1741292	34.73682	2
GAGGG	1655035	2.1660213	13.826559	11
GAGAG	2041715	2.135112	5.0488977	11
TGAGG	2015120	2.0076902	17.611328	10
GGGGG	1182810	1.9373161	5.96076	13
TTGAG	2551075	1.9349033	28.4499	9
AGGGG	1278940	1.6738085	7.9593205	12
TGAGA	1867590	1.4867821	5.4048166	10
TGAGC	1390115	1.4707942	6.142729	10
GAGTG	1319985	1.3151182	6.9930744	11
TGAGT	1707620	1.2951713	8.539096	10
TTGAT	1805505	1.0424973	8.705555	9
TTGAC	1145395	0.9225645	6.5997567	9
>>END_MODULE