FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_C_8_TGACCA_L007_R2_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 29498503 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[FAIL]](Icons/error.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGTGT | 7252730 | 4.236372 | 36.925755 | 4 |
| TTTTT | 10129825 | 3.8330812 | 4.8508353 | 18 |
| AAAAA | 6518360 | 3.2402945 | 3.3462179 | 43 |
| GTTTG | 5300440 | 3.0960255 | 36.345177 | 7 |
| TGTTT | 6499010 | 3.0553892 | 29.802576 | 6 |
| GTGTT | 4974565 | 2.9056792 | 36.281757 | 5 |
| TTTGA | 5700640 | 2.830368 | 31.076042 | 8 |
| CTTTG | 4355000 | 2.751281 | 39.361874 | 1 |
| GGGGG | 2378915 | 2.6649628 | 5.1831026 | 13 |
| TTGTG | 4553825 | 2.659922 | 36.2672 | 3 |
| TTTGT | 4998690 | 2.3500414 | 29.43019 | 2 |
| GAGGG | 2358720 | 2.246029 | 10.223059 | 11 |
| TTGAG | 3575210 | 2.205434 | 22.7044 | 9 |
| TGAGG | 2634315 | 2.0189867 | 13.32449 | 10 |
| ACTTT | 3121980 | 1.6765008 | 16.723532 | 3 |
| AGGGG | 1756640 | 1.6727142 | 5.758342 | 12 |
| AACTT | 2842980 | 1.6123058 | 18.164433 | 2 |
| TGAGC | 1784925 | 1.4795854 | 5.3258643 | 10 |
| TGAGT | 2119695 | 1.307573 | 6.6734943 | 10 |
| GAGTG | 1684510 | 1.291039 | 5.228337 | 11 |
| TAACT | 2207250 | 1.2517717 | 18.008469 | 1 |
| TTGAT | 2323585 | 1.15366 | 6.883443 | 9 |
| TTGAC | 1563605 | 1.043215 | 6.6060276 | 9 |
| GTAAC | 1040090 | 0.7328546 | 5.6112876 | 1 |