FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_C_6_GTCCGC_L007_R2_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 41850372 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[FAIL]](Icons/error.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGTGT | 12204140 | 4.7635336 | 47.283066 | 4 |
| TTTTT | 17122620 | 4.3137336 | 5.650812 | 18 |
| GTTTG | 9136875 | 3.5663152 | 46.75831 | 7 |
| AAAAA | 9364195 | 3.4847467 | 3.7107182 | 44 |
| GTGTT | 8737570 | 3.410458 | 46.718735 | 5 |
| TGTTT | 10847550 | 3.401608 | 38.082268 | 6 |
| TTTGA | 9707210 | 3.29102 | 40.798107 | 8 |
| TTGTG | 7968405 | 3.1102366 | 46.723324 | 3 |
| CTTTG | 7151395 | 3.0804265 | 51.621304 | 1 |
| GGGGG | 3527505 | 2.6552043 | 5.9999075 | 13 |
| TTTGT | 8133970 | 2.5506752 | 37.74722 | 2 |
| TTGAG | 5955075 | 2.5130014 | 29.470125 | 9 |
| GAGGG | 3659125 | 2.3923333 | 13.185012 | 11 |
| TGAGG | 4140815 | 2.1750076 | 17.221024 | 10 |
| ACTTT | 4757875 | 1.7801113 | 20.36835 | 3 |
| AACTT | 4298085 | 1.7385719 | 22.68538 | 2 |
| AGGGG | 2627935 | 1.718142 | 7.271216 | 12 |
| TGAGC | 2639440 | 1.5299767 | 6.750938 | 10 |
| TGAGA | 3269965 | 1.4918739 | 5.4953537 | 10 |
| TAACT | 3393460 | 1.372652 | 22.55061 | 1 |
| TGAGT | 3184255 | 1.343734 | 8.342552 | 10 |
| GAGTG | 2521750 | 1.3245763 | 6.4778924 | 11 |
| TTGAT | 3677605 | 1.2468125 | 9.076061 | 9 |
| TTGAC | 2427850 | 1.1306429 | 8.725024 | 9 |
| GTAAC | 1557710 | 0.7842847 | 6.8931875 | 1 |