FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_C_2_GATCAG_L006_R1_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 34096341 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 11653700 | 4.025397 | 5.0622425 | 17 |
| TGTGT | 6873880 | 3.6046014 | 43.394764 | 4 |
| AAAAA | 7476415 | 3.2549982 | 3.3859792 | 11 |
| TGTTT | 6240880 | 2.656109 | 35.246998 | 6 |
| GTTTG | 4826725 | 2.5310915 | 42.67747 | 7 |
| CTTTG | 4442540 | 2.453884 | 44.896473 | 1 |
| TTTGA | 5386160 | 2.4009426 | 36.518894 | 8 |
| GTGTT | 4476210 | 2.3472846 | 42.655556 | 5 |
| TTTGT | 5126650 | 2.1818943 | 34.91508 | 2 |
| TTGTG | 4059770 | 2.1289065 | 42.638702 | 3 |
| GAGGG | 2469820 | 2.0593655 | 11.340524 | 11 |
| TTGAG | 3414085 | 1.8751329 | 26.229464 | 9 |
| TGAGG | 2713075 | 1.8360088 | 15.312162 | 10 |
| AGGGG | 1814510 | 1.5129602 | 6.291974 | 12 |
| TGAGC | 2009600 | 1.4324845 | 5.743464 | 10 |
| TGAGA | 2476755 | 1.4247651 | 5.0239563 | 10 |
| GAGTG | 1837900 | 1.243755 | 5.8562407 | 11 |
| TGAGT | 2263285 | 1.243074 | 7.6622148 | 10 |
| TTGAT | 2473885 | 1.1027626 | 8.364473 | 9 |
| TTGAC | 1616785 | 0.935357 | 7.4183187 | 9 |