##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename 140701_JD_C_14_TGACCA_L002_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20892507 Filtered Sequences 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.98541950949209 34.0 33.0 34.0 31.0 34.0 2 33.171905889513404 34.0 34.0 34.0 31.0 34.0 3 33.2084737844051 34.0 34.0 34.0 31.0 34.0 4 36.528265851484456 37.0 37.0 37.0 35.0 37.0 5 36.464444453698164 37.0 37.0 37.0 35.0 37.0 6 36.43281507575898 37.0 37.0 37.0 35.0 37.0 7 36.45025443811028 37.0 37.0 37.0 35.0 37.0 8 36.41711920929355 37.0 37.0 37.0 35.0 37.0 9 38.24360183294422 39.0 39.0 39.0 37.0 39.0 10 38.23611718785113 39.0 39.0 39.0 37.0 39.0 11 38.226277248584864 39.0 39.0 39.0 37.0 39.0 12 38.18076672177255 39.0 39.0 39.0 37.0 39.0 13 38.1532228276865 39.0 39.0 39.0 37.0 39.0 14 39.70022520514173 41.0 40.0 41.0 38.0 41.0 15 39.67684002690534 41.0 40.0 41.0 37.0 41.0 16 39.65383823970958 41.0 40.0 41.0 37.0 41.0 17 39.61609954229045 41.0 40.0 41.0 37.0 41.0 18 39.60293941746675 41.0 40.0 41.0 37.0 41.0 19 39.57915002732798 41.0 40.0 41.0 37.0 41.0 20 39.49454682484969 41.0 40.0 41.0 37.0 41.0 21 39.481388758180145 41.0 39.0 41.0 37.0 41.0 22 39.41295996693934 41.0 39.0 41.0 37.0 41.0 23 39.395107059195915 41.0 39.0 41.0 36.0 41.0 24 39.3710488166882 41.0 39.0 41.0 36.0 41.0 25 39.321888081693594 41.0 39.0 41.0 36.0 41.0 26 39.2119926057701 41.0 39.0 41.0 36.0 41.0 27 39.14274423840088 40.0 39.0 41.0 36.0 41.0 28 39.07828256321752 40.0 39.0 41.0 35.0 41.0 29 39.02095880594894 40.0 39.0 41.0 35.0 41.0 30 38.92249857807873 40.0 39.0 41.0 35.0 41.0 31 38.847039563035686 40.0 38.0 41.0 35.0 41.0 32 38.7560121434924 40.0 38.0 41.0 35.0 41.0 33 38.65919393972202 40.0 38.0 41.0 35.0 41.0 34 38.57969701769156 40.0 38.0 41.0 35.0 41.0 35 38.493116264122825 40.0 38.0 41.0 34.0 41.0 36 38.40792988605915 40.0 38.0 41.0 34.0 41.0 37 38.59258661490457 40.0 38.0 41.0 35.0 41.0 38 38.60013482345608 40.0 38.0 41.0 35.0 41.0 39 38.53139252268768 40.0 38.0 41.0 35.0 41.0 40 38.478540272835616 40.0 38.0 41.0 35.0 41.0 41 38.433684526227516 40.0 38.0 41.0 34.0 41.0 42 38.35553765759179 40.0 38.0 41.0 34.0 41.0 43 38.29297704674695 40.0 38.0 41.0 34.0 41.0 44 38.20732050011997 40.0 38.0 41.0 34.0 41.0 45 38.13496015581089 40.0 37.0 41.0 34.0 41.0 46 38.04387170960383 40.0 37.0 41.0 33.0 41.0 47 37.923413978035285 40.0 37.0 41.0 33.0 41.0 48 37.85878324702727 40.0 37.0 41.0 33.0 41.0 49 37.794047933069976 40.0 36.0 41.0 33.0 41.0 50 37.871509532101626 40.0 37.0 41.0 33.0 41.0 51 37.58750632463591 40.0 36.0 41.0 33.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 3.0 10 8.0 11 19.0 12 43.0 13 104.0 14 207.0 15 390.0 16 618.0 17 1057.0 18 1809.0 19 2972.0 20 5083.0 21 8366.0 22 12913.0 23 19467.0 24 27546.0 25 37626.0 26 50371.0 27 65930.0 28 86539.0 29 111349.0 30 143553.0 31 183123.0 32 237271.0 33 320529.0 34 473671.0 35 752937.0 36 1185806.0 37 1902064.0 38 3915662.0 39 1.1335394E7 40 10075.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 21.62105833509132 24.939300334242688 27.02815165548511 26.41148967518088 2 23.303255643671623 24.944801668003503 31.643531651607237 20.108411036717637 3 21.644934785210005 23.871365322484145 33.51573052530812 20.96796936699773 4 22.849883739725367 23.75504293509963 32.550947961949895 20.844125363225107 5 28.50276003403327 24.09799671614153 27.102788484439582 20.29645476538562 6 22.462799701347475 23.583670451803606 32.687001133947206 21.26652871290171 7 28.48102977417306 24.285309424150856 26.59231399894977 20.641346802726318 8 22.95295150553258 24.389543102701843 31.69646419168365 20.961041200081922 9 21.88997232357036 25.039019970174 32.065917220944335 21.00509048531131 10 22.592694241657753 24.424523319509873 31.899993232023004 21.08278920680937 11 28.48821191500165 24.24814473667332 26.02979296063478 21.233850387690254 12 22.54955897058483 30.61607226790266 25.51100673333051 21.323362028182 13 25.72055139194162 24.968970932976113 26.940701754940182 22.36977592014209 14 24.799096633065627 25.31544443182429 27.35578358308077 22.52967535202932 15 25.061640520211387 25.323270204001847 26.95646817301533 22.65862110277144 16 24.93832588639442 25.31585412299365 26.84712779628763 22.8986921943243 17 24.649128991556637 25.59666008488115 26.775652151271267 22.978558772290945 18 24.576863848843033 25.449253170047996 27.054512893067358 22.919370088041614 19 24.058448823535183 25.896872389160396 27.545514614958073 22.499164172346344 20 23.649666228990693 25.992793088778534 27.667420633416313 22.690120048814467 21 23.87539824161012 25.967205377793434 27.324663600716836 22.83273277987961 22 23.629485920478572 26.099414493435376 27.580490938689167 22.690608647396886 23 23.78306251135874 26.20470583065977 27.23875598079254 22.773475677188955 24 23.373317524794896 26.23734911277043 27.433328130511097 22.95600523192358 25 23.453615019946167 26.66543975022598 27.119842373944508 22.761102855883347 26 23.53783415101113 26.41496709345459 26.97742730644968 23.0697714490846 27 23.521843892394106 26.455600165399073 26.932144402639434 23.09041153956738 28 23.563387372988494 26.590000228311627 26.97605269489808 22.870559703801803 29 23.69575156472478 26.52281499018882 26.796090193548956 22.985343251537444 30 23.70556312310853 26.384433797218108 26.877779855145263 23.0322232245281 31 23.809067959028347 26.28545685782249 26.653839671915097 23.251635511234063 32 23.90631422936442 26.47571855995647 26.501982297082833 23.11598491359628 33 23.762033842587886 26.312004925419647 26.547449021375346 23.378512210617117 34 23.730346672997502 26.429421530404156 26.61888227113568 23.22134952546266 35 23.949477465824362 26.32860688537581 26.43459369711848 23.287321951681346 36 24.099105912229334 26.32696858123612 26.414206229302238 23.159719277232306 37 24.031943226508083 26.137178672221733 26.493501644692753 23.33737645657743 38 23.866580766581677 26.278576656013712 26.675001400024602 23.179841177380005 39 23.784072442814068 26.203743763254455 26.59097350069094 23.421210293240538 40 23.87210447958939 26.258187716491534 26.675964203414544 23.193743600504533 41 23.915746355491162 26.068965781320376 26.708428284174285 23.306859579014176 42 23.80138791889372 26.26258110525091 26.61054445204592 23.325486523809452 43 23.828295889869636 26.39866619925757 26.465508444283962 23.307529466588832 44 24.044449947763407 26.005230695136994 26.591658045925985 23.358661311173616 45 24.09136456438949 25.912261165513012 26.42868476468295 23.567689505414542 46 23.82690238762408 26.28482939979781 26.42658879098055 23.461679421597562 47 23.80693185626095 26.371062647890998 26.44155206134029 23.380453434507764 48 23.806270176300995 26.032458222238287 26.418144018433505 23.74312758302722 49 24.06431701960705 26.10336607795778 26.466890856793473 23.365426045641698 50 23.74958046680236 26.082419582210985 26.42663304912612 23.741366901860538 51 23.84141209374849 26.176097014050942 26.336211055876742 23.646279836323828 >>END_MODULE >>Per base GC content pass #Base %GC 1 48.032548010272194 2 43.41166668038926 3 42.61290415220773 4 43.694009102950474 5 48.79921479941889 6 43.72932841424919 7 49.12237657689938 8 43.913992705614504 9 42.895062808881676 10 43.67548344846712 11 49.7220623026919 12 43.87292099876683 13 48.0903273120837 14 47.32877198509494 15 47.720261622982825 16 47.83701808071872 17 47.62768776384758 18 47.49623393688465 19 46.557612995881534 20 46.33978627780515 21 46.70813102148973 22 46.32009456787546 23 46.55653818854769 24 46.32932275671847 25 46.214717875829514 26 46.60760560009573 27 46.61225543196149 28 46.4339470767903 29 46.681094816262224 30 46.73778634763663 31 47.06070347026241 32 47.02229914296069 33 47.14054605320501 34 46.95169619846016 35 47.23679941750571 36 47.25882518946164 37 47.369319683085514 38 47.04642194396168 39 47.205282736054606 40 47.06584808009392 41 47.22260593450534 42 47.12687444270317 43 47.13582535645847 44 47.403111258937024 45 47.659054069804036 46 47.28858180922164 47 47.18738529076872 48 47.549397759328215 49 47.42974306524875 50 47.490947368662894 51 47.487691930072316 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 28438.0 1 16736.5 2 5035.0 3 6612.0 4 8189.0 5 17939.5 6 27690.0 7 44273.5 8 60857.0 9 41827.5 10 22798.0 11 20481.0 12 18164.0 13 20726.5 14 23289.0 15 33135.0 16 42981.0 17 64376.5 18 85772.0 19 107172.0 20 128572.0 21 150380.0 22 172188.0 23 203945.0 24 235702.0 25 279683.5 26 386295.0 27 448925.0 28 483170.0 29 517415.0 30 549714.0 31 582013.0 32 636442.0 33 690871.0 34 735391.0 35 779911.0 36 878035.5 37 976160.0 38 1035117.0 39 1094074.0 40 1164085.5 41 1234097.0 42 1258984.5 43 1283872.0 44 1309140.0 45 1334408.0 46 1331938.5 47 1329469.0 48 1338683.5 49 1347898.0 50 1317156.0 51 1286414.0 52 1224104.0 53 1161794.0 54 1091846.0 55 1021898.0 56 955535.0 57 889172.0 58 809164.0 59 729156.0 60 672187.0 61 615218.0 62 550110.0 63 485002.0 64 435735.5 65 386469.0 66 330372.0 67 274275.0 68 275478.5 69 276682.0 70 251264.0 71 225846.0 72 196696.5 73 167547.0 74 146248.0 75 103203.0 76 81457.0 77 77361.0 78 73265.0 79 74653.5 80 76042.0 81 66966.0 82 57890.0 83 53195.0 84 48500.0 85 44393.5 86 40287.0 87 45729.0 88 51171.0 89 32169.5 90 13168.0 91 7776.0 92 2384.0 93 1795.0 94 1206.0 95 700.5 96 195.0 97 122.0 98 49.0 99 33.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.2143400023750142 2 0.01140600311872577 3 3.350483501094436E-5 4 7.658248002501566E-4 5 5.265045501719827E-5 6 0.0 7 1.914562000625392E-5 8 0.0 9 0.0 10 4.78640500156348E-6 11 2.6325227508599137E-4 12 1.1008731503596001E-4 13 0.0 14 0.0 15 0.0 16 1.4359215004690438E-4 17 0.0 18 0.0 19 2.010290100656661E-4 20 0.0016225912955300193 21 0.0031925321360428403 22 0.0 23 0.0 24 0.0 25 1.0530091003439654E-4 26 3.350483501094436E-5 27 3.829124001250784E-5 28 4.786405001563479E-5 29 7.179607502345219E-5 30 0.003259541806064729 31 5.265045501719827E-4 32 0.0027904741159115085 33 3.5419397011569745E-4 34 2.488930600813009E-4 35 0.0013641254254455916 36 7.227471552360854E-4 37 0.005107094136668233 38 8.136888502657915E-5 39 0.0 40 0.0011248051753674176 41 5.600093851829271E-4 42 0.0017422514205691064 43 1.4837855504846786E-4 44 3.063299201000627E-4 45 7.753976102532837E-4 46 3.063299201000627E-4 47 3.829124001250784E-5 48 5.360773601751097E-4 49 5.791550051891809E-4 50 0.0011439507953736716 51 0.0025032898158176995 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2.0892507E7 >>END_MODULE >>Sequence Duplication Levels warn #Total Duplicate Percentage 44.81218547451527 #Duplication Level Relative count 1 100.0 2 14.229036331286231 3 4.908023876485106 4 2.5318544452734892 5 1.6529874304080814 6 1.1679963266945992 7 0.9147391379211387 8 0.7432703897147449 9 0.6091086494863112 10++ 16.73147563565402 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 34899 0.16704074814956385 No Hit CTTTGTGTTTGACGGGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCA 24787 0.11864062077375395 No Hit >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 8504030 5.4878235 7.081896 18 AAAAA 4618945 4.103625 4.5515127 47 TGTGT 3984350 3.388609 55.550877 4 TTTGA 3782485 2.9872167 51.592567 8 TGTTT 3997605 2.9615533 48.539074 6 GTTTG 3450915 2.9349332 55.23611 7 CTTTG 3036210 2.727411 58.08661 1 GTGTT 3174730 2.7000437 55.16902 5 TTTGT 3252925 2.4098704 48.131348 2 TTGTG 2706460 2.301789 55.05566 3 GAGGG 1714250 2.0483139 12.030679 11 TTGAG 2241265 2.0320153 32.58116 9 TGAGG 1663985 1.7319188 17.497517 10 TGAGC 1266115 1.3918941 7.2946453 10 AGGGG 1120295 1.3386121 5.958892 12 TTGAT 1679235 1.3261755 11.699215 9 TGAGA 1330215 1.2856584 5.5994577 10 TGAGT 1248980 1.1323726 8.735266 10 TGATT 1406745 1.1109768 5.7527366 10 TTGAC 1159050 1.1099179 11.697569 9 GAGTG 1065420 1.1089168 5.6878786 11 TGACG 495970 0.5452409 5.4336553 10 >>END_MODULE