FastQCFastQC Report
Wed 17 Sep 2014
G140_A6_L52_TAAGGCGA-GTAAGGAG_L006_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameG140_A6_L52_TAAGGCGA-GTAAGGAG_L006_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1375
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAAAAGAGTCTACCAGTAAAAATTCAAAAATCACGCGAGCACCAATGT20.14545454545454545No Hit
CAATCTATTTTTCGTGTAACAATCTATTTTTTCGTGTAACAATCTATTTT20.14545454545454545No Hit
CATGTATGTCAGTTTGGACAGCGTGAATGTTTTAAGACAGTCCAGCTTTT20.14545454545454545No Hit
AAGCAAGCTTTTCGCCACCGATGATACAAGGCGTTCGCCAGTACCTTAGG20.14545454545454545No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)