FastQCFastQC Report
Thu 11 Sep 2014
NYCLib8_TTAGGC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib8_TTAGGC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2197061
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG13750.07.59395194-95
CATCTCG23000.07.32568794-95
CTTAGGC33050.07.323969494-95
CTCGTAT13150.07.218748692-93
CGTATGC12650.07.128708494-95
TATGCCG10251.8189894E-126.94568794-95
TCTCGTA14450.06.89777792-93
TAGGCAT32850.06.64615294-95
TTAGGCA32950.06.625981394-95
ACTTAGG35850.06.421112592-93
ATCTCGT19300.06.3938794-95
GTATGCC13750.06.38582394-95
GCCGTCT11108.54925E-116.198252748-49
CACTTAG40650.06.12994392-93
CCGTCTT11552.3464963E-105.957168650-51
GCATCTC27550.05.85740394-95
AGGCATC28700.05.78807294-95
GGCATCT29100.05.545537592-93
CAGTCAC53400.05.42171194-95
ATGCCGT12702.5065674E-95.42008446-47
Produced by FastQC (version 0.11.2)