FastQCFastQC Report
Thu 11 Sep 2014
NYCLib20_GTGGCC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib20_GTGGCC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1423941
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA18500.06.41371994-95
ACGTCTG21850.06.299241594-95
CACGTCT22850.06.231272794-95
ACACGTC23800.06.182071792-93
CACACGT24550.05.993210392-93
GCACACG26400.05.484977790-91
ACGTGGC10052.9003459E-65.194885392-93
AGTCACG9851.1014796E-55.060772488-89
Produced by FastQC (version 0.11.2)