FastQCFastQC Report
Thu 11 Sep 2014
NYCLib1_CGATGT_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib1_CGATGT_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3911761
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT43450.011.03176894-95
TATGCCG26750.010.73359394-95
CGTATGC33800.010.60092694-95
GTATGCC34250.010.18451494-95
TATCTCG60300.09.798635594-95
TCGTATG38750.09.73663794-95
TCTCGTA47800.09.68033294-95
ATCTCGT58800.08.47521192-93
GATGTAT99700.08.42542294-95
GTATCTC76600.08.33310994-95
ATGCCGT29000.08.26431694-95
CGATGTA101500.08.2058794-95
ATGTATC90800.08.17978894-95
CCGTCTT24000.07.711998594-95
GCCGTCT23550.07.6578494-95
CCGATGT114650.07.554876392-93
TGTATCT91600.07.383001394-95
ACCGATG129500.07.34781494-95
TGCCGTC31750.07.17482194-95
CACCGAT145900.06.928478294-95
Produced by FastQC (version 0.11.2)