FastQCFastQC Report
Thu 11 Sep 2014
NYCLib16_CCGTCC_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib16_CCGTCC_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2422284
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACCGT2800.0070703267.74618218-19
GTGTAGG29350.05.796840794-95
CGTGTAG27850.05.701787594-95
CGTCGTG54000.05.67124294-95
TCGTGTA29200.05.67112492-93
GTAGGGA21000.05.617230494-95
TGTAGGG28450.05.58153994-95
GTCGTGT35050.05.43662694-95
GCGTCGT56550.05.335280494-95
GGTTCCG5600.0052814125.31835678-79
AGCGTCG60700.05.11989592-93
Produced by FastQC (version 0.11.2)