FastQCFastQC Report
Thu 11 Sep 2014
NYCLib14_AGTTCC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib14_AGTTCC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1684969
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT9601.4551915E-116.92098294-95
CGTATGC10004.1836756E-116.644142694-95
TCGTATG9251.4826583E-86.156734594-95
CCAGTCA30550.05.59245194-95
TCTCGTA11902.9831426E-95.58331394-95
CAGTCAC29900.05.3965894-95
Produced by FastQC (version 0.11.2)