FastQCFastQC Report
Thu 11 Sep 2014
NYCLib11_TAGCTT_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib11_TAGCTT_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1225116
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGATC6452.6496025E-55.967892694-95
GTGTAGG18650.05.827659694-95
TCGTGTA19650.05.531086494-95
TCTGGTA4950.0092713655.479581490-91
CGTGTAG18800.05.419951492-93
TGTAGGG18650.05.09920294-95
Produced by FastQC (version 0.11.2)