FastQCFastQC Report
Thu 11 Sep 2014
NYCLib10_GATCAG_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameNYCLib10_GATCAG_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1329249
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTGGCT10100.00141326186.48578743
AGCGTCG38050.05.654515794-95
AAGAACC6652.608584E-45.449100594-95
AAGAGCG43550.05.14831792-93
CGTGCTC6050.0080373975.130688750-51
GAGCGTC40150.05.076722694-95
AGAGCGT40400.05.045211392-93
Produced by FastQC (version 0.11.2)