FastQCFastQC Report
Thu 11 Sep 2014
LONLib39_CTATAC_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameLONLib39_CTATAC_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1832813
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTAAAC8206.0027844E-46.99414161
GTAAATC9050.00183732346.3372331
GTCTTTA11801.4731237E-46.07541941
GTTTCGC5600.00347900955.510038444-45
GTTTATG11350.00375523265.4741221
ATCGGAA20000.05.338677494-95
CGTCTGA8901.03146485E-55.332084792-93
GTATATT13700.0011087495.23284341
GATTAAT13100.00359606585.10768131
Produced by FastQC (version 0.11.2)