FastQCFastQC Report
Thu 11 Sep 2014
LONLib37_CGGAAT_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameLONLib37_CGGAAT_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3396038
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCTC13204.2466127E-87.2421071
GTCTAAG7550.00193157626.96393351
GTGCGAA9000.00172553476.3730541
GTTAAGT13402.0752712E-56.06391331
GTTTAAT28751.8189894E-125.8188761
GGTGACT10950.00245405975.6746371
GTACTTT26401.6734703E-105.6126331
GTATACA15453.0301288E-55.5686881
CACGTCT26500.05.55180894-95
GTTTATT47600.05.42245151
GTTCAAA34650.05.37985131
GGTTATT21402.7200622E-75.3605131
GTTTTAG26901.5752448E-95.33062171
GTAAAAT54200.05.29128171
GTTAATC14504.1480418E-45.27425151
GTTATCT17253.081825E-55.2646971
GTATCAA19105.5599303E-65.2552671
GTCTTTA21101.1587017E-65.21019841
GTTATTC18401.6204816E-55.19542461
GTTTGAG25851.8262654E-85.1773361
Produced by FastQC (version 0.11.2)