FastQCFastQC Report
Thu 11 Sep 2014
LONLib35_CATTTT_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameLONLib35_CATTTT_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences622854
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGGAT2950.004931592411.345261
CTGAACT7551.8189894E-107.54405694-95
GTCTGAA7853.245077E-96.953704492-93
ACACGTC8055.467882E-96.78148688-89
ACGTCTG7405.4153134E-86.735935790-91
CCAGTCA5051.4204161E-46.58005688-89
TCTGAAC7403.8621874E-76.41414794-95
CGTCTGA6905.4768043E-66.191294792-93
CACACGT7758.857951E-76.124721592-93
CAGTCAC4750.0034132315.996261688-89
ACCATTT6152.8479262E-45.78837794-95
CACGTCT8303.0038573E-65.718636594-95
GCACACG9606.896291E-65.192283690-91
Produced by FastQC (version 0.11.2)