FastQCFastQC Report
Mon 11 Aug 2014
140701_JD_D_8_TGACCA_L003_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 140701_JD_D_8_TGACCA_L003_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 32168050
Filtered Sequences 0
Sequence length 51
%GC 44

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 8230835 3.0880702 3.5615656 17
TGTGT 3534840 2.121318 16.526329 4
TGTTT 4050005 1.9217423 13.374826 6
GAGGG 1947560 1.8988957 5.3440356 11
CTTTG 2800400 1.7057039 16.546074 1
GTTTG 2819075 1.6917752 16.0382 7
TTTGA 3476995 1.6758116 13.283039 8
TTTGT 3298165 1.5649915 13.111228 2
GTGTT 2334095 1.4007304 15.93953 5
TGAGG 1815600 1.3996971 6.1443305 10
TTGAG 2111925 1.2873482 9.661171 9
TTGTG 2121140 1.2729324 15.889182 3
Produced by FastQC (version 0.10.1)