FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_D_12_CCGTCC_L003_R2_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 37435085 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 42 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 14309870 | 3.7675948 | 4.70764 | 17 |
| TGTGT | 7258025 | 3.3687313 | 34.099182 | 4 |
| AAAAA | 9059290 | 3.0273597 | 3.2164752 | 44 |
| GTTTG | 6022735 | 2.7953846 | 33.782124 | 7 |
| TGTTT | 7568410 | 2.6457136 | 26.029331 | 6 |
| GGGGG | 2370555 | 2.5752945 | 5.468358 | 13 |
| GTGTT | 5389855 | 2.5016403 | 33.631874 | 5 |
| CTTTG | 4897210 | 2.4237375 | 35.98837 | 1 |
| TTTGA | 6555850 | 2.4036734 | 26.878368 | 8 |
| GAGGG | 2655540 | 2.278916 | 11.030954 | 11 |
| TTGTG | 4890525 | 2.2698822 | 33.558655 | 3 |
| TTTGT | 5781020 | 2.0208898 | 25.618006 | 2 |
| TTGAG | 4097515 | 1.9946958 | 21.325865 | 9 |
| TGAGG | 2956890 | 1.9111772 | 13.088755 | 10 |
| AGGGG | 1959405 | 1.6815108 | 5.933628 | 12 |
| AACTT | 3881280 | 1.5915442 | 11.109361 | 2 |
| TGAGC | 2148265 | 1.4806166 | 5.957329 | 10 |
| ACTTT | 3709900 | 1.4504329 | 10.097102 | 3 |
| TGAGT | 2437925 | 1.186797 | 6.2186136 | 10 |
| TTGAT | 3026010 | 1.1094731 | 6.195456 | 9 |
| TAACT | 2663130 | 1.0920337 | 10.769517 | 1 |
| TTGAC | 1971765 | 1.0235293 | 5.6665893 | 9 |