FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_D_10_GATCAG_L003_R2_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 37014713 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 11819620 | 3.7028396 | 4.642635 | 16 |
| TGTGT | 7176455 | 3.4469202 | 37.388275 | 4 |
| AAAAA | 7833525 | 3.0848055 | 3.2427227 | 10 |
| TGTTT | 7064245 | 2.740262 | 30.478897 | 6 |
| GTTTG | 5697230 | 2.7364345 | 37.07247 | 7 |
| GGGGG | 2867975 | 2.6150594 | 5.038648 | 13 |
| TTTGA | 6283400 | 2.5514607 | 31.585232 | 8 |
| GTGTT | 5271530 | 2.5319664 | 36.947796 | 5 |
| CTTTG | 4809095 | 2.445542 | 39.377193 | 1 |
| TTGTG | 4795765 | 2.303452 | 36.836697 | 3 |
| GAGGG | 2836645 | 2.186674 | 10.527668 | 11 |
| TTTGT | 5434880 | 2.1082218 | 30.138391 | 2 |
| TTGAG | 3909015 | 1.9654248 | 23.115698 | 9 |
| TGAGG | 2921050 | 1.8185412 | 13.540157 | 10 |
| AGGGG | 2002760 | 1.5438602 | 5.6606097 | 12 |
| AACTT | 3417995 | 1.5382391 | 11.004909 | 2 |
| ACTTT | 3507295 | 1.5078458 | 10.2039385 | 3 |
| TGAGC | 2125870 | 1.401236 | 5.7431693 | 10 |
| TGAGT | 2334195 | 1.1736169 | 6.51557 | 10 |
| TTGAT | 2824390 | 1.1468823 | 6.710094 | 9 |
| TAACT | 2398440 | 1.0793973 | 10.697179 | 1 |
| TTGAC | 1936685 | 1.0309523 | 6.916185 | 9 |