FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_C_17_CAGATC_L004_R1_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 45160315 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 43 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[FAIL]](Icons/error.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TGTGT | 7213105 | 3.0147314 | 23.107403 | 4 |
| TGTTT | 6767465 | 2.173141 | 17.821524 | 6 |
| CTTTG | 4618525 | 1.9781952 | 22.888847 | 1 |
| GAGGG | 2688210 | 1.942531 | 7.2091284 | 11 |
| GTTTG | 4524815 | 1.8911552 | 22.173155 | 7 |
| TTTGT | 5709330 | 1.8333569 | 17.55329 | 2 |
| TTTGA | 5376785 | 1.7621132 | 17.660805 | 8 |
| TGAGG | 3122675 | 1.7336723 | 8.930676 | 10 |
| GTGTT | 4103300 | 1.7149825 | 22.141533 | 5 |
| TTGTG | 4025605 | 1.6825094 | 22.226051 | 3 |
| TTGAG | 3536805 | 1.5086441 | 13.81594 | 9 |