FastQCFastQC Report
Tue 12 Aug 2014
140701_JD_B_18_CCGTCC_L006_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 140701_JD_B_18_CCGTCC_L006_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 37169300
Filtered Sequences 0
Sequence length 51
%GC 43

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 10685675 3.240356 3.933143 16
TGTGT 5262000 2.6576953 21.935019 4
TGTTT 5318605 2.0814707 17.17894 6
GAGGG 2255480 1.9451905 6.7086973 11
GTTTG 3824455 1.9316301 21.308067 7
CTTTG 3707890 1.920323 21.993174 1
TTTGA 4462485 1.7904183 17.212732 8
TTTGT 4402130 1.7228022 16.89487 2
GTGTT 3249870 1.6414223 21.197857 5
TGAGG 2422425 1.6187943 8.253364 10
TTGTG 3099945 1.5656995 21.220146 3
TTGAG 2789560 1.444426 13.009384 9
Produced by FastQC (version 0.10.1)