FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | 140701_JD_B_16_GGCTAC_L005_R1_001.fastq.gz |
| File type | Conventional base calls |
| Encoding | Sanger / Illumina 1.9 |
| Total Sequences | 27772345 |
| Filtered Sequences | 0 |
| Sequence length | 51 |
| %GC | 44 |
Per base sequence quality
Per sequence quality scores
![[WARN]](Icons/warning.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| TTTTT | 7804365 | 3.2806737 | 3.9328227 | 16 |
| TGTGT | 4358285 | 2.93924 | 25.83993 | 4 |
| TGTTT | 4141545 | 2.2051334 | 20.49887 | 6 |
| CTTTG | 2869630 | 1.993499 | 25.913061 | 1 |
| GTTTG | 2921785 | 1.9704605 | 25.052814 | 7 |
| GAGGG | 1748820 | 1.9412494 | 7.5683837 | 11 |
| TTTGA | 3417965 | 1.86708 | 20.56921 | 8 |
| TTTGT | 3456895 | 1.8405967 | 20.206415 | 2 |
| GTGTT | 2605665 | 1.7572681 | 24.98326 | 5 |
| TTGTG | 2462620 | 1.660798 | 24.985441 | 3 |
| TGAGG | 1885120 | 1.6520692 | 9.596191 | 10 |
| TTGAG | 2194665 | 1.5184851 | 15.573327 | 9 |