FastQCFastQC Report
Mon 21 Jul 2014
ZL7_ATCACG_L008_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL7_ATCACG_L008_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 9633027
Filtered Sequences 0
Sequence length 101
%GC 41

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 1761140 3.6253393 4.0372353 25-29
CTGGG 1707405 3.480361 3.6588728 75-79
CCAGG 1577150 3.23665 3.5069585 25-29
GGAGG 1545245 3.151781 3.4574203 70-74
CCTCC 1519890 3.1267707 3.4907968 70-74
CCTGG 1513110 3.0937865 3.3010347 70-74