FastQCFastQC Report
Mon 21 Jul 2014
ZL7_ATCACG_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL7_ATCACG_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 10179575
Filtered Sequences 0
Sequence length 101
%GC 41

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 1846500 3.6219807 3.9670706 25-29
CTGGG 1795585 3.4872112 3.7145002 85-89
CCAGG 1648890 3.2260041 3.4644809 25-29
GGAGG 1616910 3.1471121 3.4359295 70-74
CCTCC 1595315 3.1224046 3.4366083 70-74
CCTGG 1587435 3.090948 3.275654 3