FastQCFastQC Report
Mon 21 Jul 2014
ZL6_CTTGTA_L008_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL6_CTTGTA_L008_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 11657818
Filtered Sequences 0
Sequence length 101
%GC 41

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2134500 3.6142223 3.949003 25-29
CTGGG 2081880 3.488877 3.665481 85-89
CCAGG 1906340 3.2198906 3.4292421 25-29
GGAGG 1878730 3.1575427 3.4109364 70-74
CCTCC 1849810 3.1231363 3.4066048 65-69
CCTGG 1843820 3.0976079 3.3126361 3