FastQCFastQC Report
Mon 21 Jul 2014
ZL6_CTTGTA_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL6_CTTGTA_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 12370038
Filtered Sequences 0
Sequence length 101
%GC 41

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2247125 3.6143985 3.9720042 25-29
CTGGG 2192045 3.4878862 3.7253902 1
CCAGG 2012990 3.2284706 3.458472 25-29
GGAGG 1978945 3.1555989 3.416446 70-74
CCTCC 1945390 3.1223402 3.4202242 95-97
CCTGG 1939770 3.0953987 3.3414056 3