FastQCFastQC Report
Mon 21 Jul 2014
ZL4_GCCAAT_L008_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL4_GCCAAT_L008_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 13406231
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2363480 3.546133 3.9064043 25-29
CTGGG 2304120 3.4194584 3.604647 85-89
GGAGG 2132255 3.1702218 3.4064727 70-74
CCAGG 2117595 3.1675858 3.44003 25-29
CCTCC 2086155 3.124291 3.4724233 70-74
CCTGG 2034240 3.0281124 3.2226746 85-89
AAAAA 8726020 3.0064235 3.442242 10-14
Produced by FastQC (version 0.10.1)