FastQCFastQC Report
Mon 21 Jul 2014
ZL4_GCCAAT_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL4_GCCAAT_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 13606977
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2381715 3.546722 3.939791 25-29
CTGGG 2326120 3.4249766 3.5986097 1
CCAGG 2129190 3.160945 3.3913953 25-29
GGAGG 2140255 3.1578994 3.4083345 70-74
CCTCC 2104045 3.1266918 3.4848785 70-74
CCTGG 2052835 3.0318968 3.2113476 70-74