ZL1_CGATGT_L007_R1_001.fastq.gz FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Kmer Content

Basic Statistics

Measure	Value
Filename	ZL1_CGATGT_L007_R1_001.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13280025
Filtered Sequences	0
Sequence length	101
%GC	41

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per base GC content

Per base GC content graph

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	68529	0.5160306550627728	TruSeq Adapter, Index 2 (100% over 50bp)

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCCAG	2599050	3.7192237	4.312791	25-29
CTGGG	2497610	3.518772	3.7935221	1
AAAAA	9331440	3.4216545	5.6120477	65-69
CCAGG	2332880	3.3052142	3.720733	25-29
GGAGG	2373775	3.2967484	3.6454194	70-74
CCTCC	2237410	3.2479064	3.7974238	70-74
CCTGG	2198225	3.1280174	3.3967369	70-74
TTTTT	8270265	3.099245	3.7262764	15-19
GGAAG	2085585	2.076273	10.300786	5
GAAGA	2186905	1.5606188	7.436434	6
AAGAG	2180050	1.5557269	7.4123645	7
AGAGC	1443300	1.4512547	9.631072	8
GAGCA	1387355	1.3950014	9.399167	9
GATCG	441820	0.4461924	8.714833	1
CGGAA	411410	0.41367742	8.700136	4
TCGGA	367540	0.37117732	8.68259	3
ATCGG	358260	0.3618055	8.67091	2