##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename Nextera-155_CAGAGAGG-TATCCTCT_L005_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1297177 Filtered Sequences 0 Sequence length 101 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.264120470837828 31.0 31.0 34.0 28.0 34.0 2 31.450396514893495 33.0 31.0 34.0 28.0 34.0 3 31.58394960749381 33.0 31.0 34.0 28.0 34.0 4 35.12986508394768 37.0 35.0 37.0 32.0 37.0 5 34.99473240737386 37.0 35.0 37.0 32.0 37.0 6 35.15469901177711 37.0 35.0 37.0 32.0 37.0 7 35.15585845262443 37.0 35.0 37.0 32.0 37.0 8 35.204186475708404 37.0 35.0 37.0 32.0 37.0 9 36.933823988553605 39.0 37.0 39.0 33.0 39.0 10-14 37.02060613162275 39.2 37.2 39.4 32.2 39.4 15-19 37.996811691850844 40.0 38.0 41.0 32.6 41.0 20-24 37.87518372589092 40.0 38.0 41.0 32.0 41.0 25-29 37.66346319738941 40.0 37.6 41.0 31.8 41.0 30-34 37.3715096706155 40.0 37.0 41.0 31.0 41.0 35-39 37.034825162641646 39.8 36.6 41.0 30.0 41.0 40-44 36.96433809726814 39.8 36.4 41.0 30.0 41.0 45-49 36.7688517449816 39.4 36.0 41.0 29.8 41.0 50-54 36.143775598858134 38.6 35.0 39.8 29.2 40.6 55-59 36.797871531795586 39.0 35.6 41.0 29.8 41.0 60-64 36.331611645904914 38.8 35.0 40.8 29.0 41.0 65-69 35.65599297551529 37.6 34.4 40.0 28.2 41.0 70-74 34.84056639918839 36.4 34.0 39.2 27.8 40.8 75-79 33.913625973941876 35.2 33.4 37.6 26.2 39.4 80-84 33.03330493833918 35.0 32.8 36.4 26.0 38.0 85-89 32.29398624859984 35.0 32.0 35.4 25.0 36.6 90-94 31.745669249454778 34.6 31.6 35.0 24.2 36.0 95-99 31.29673807044066 34.0 31.0 35.0 22.2 35.2 100-101 30.480098321200575 34.0 30.0 35.0 19.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 5 4.0 6 44.0 7 140.0 8 278.0 9 448.0 10 530.0 11 802.0 12 1406.0 13 2156.0 14 2846.0 15 3298.0 16 3728.0 17 4313.0 18 4672.0 19 5281.0 20 5890.0 21 6496.0 22 7189.0 23 8227.0 24 9152.0 25 10552.0 26 11988.0 27 13935.0 28 16703.0 29 19317.0 30 23901.0 31 29632.0 32 37240.0 33 49819.0 34 69671.0 35 104286.0 36 172252.0 37 292757.0 38 319448.0 39 58725.0 40 51.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.92348889055113 23.533154068657804 10.321110998867193 24.222246041923874 2 14.952895552818903 23.683084271348143 40.36940188880466 20.994618287028292 3 15.508785890757002 28.23182599093806 32.963437616628575 23.295950501676366 4 10.788891107905103 18.252702080623283 44.990365271488066 25.968041539983545 5 10.469706328477493 39.56295125884011 39.09325264171735 10.874089770965053 6 25.368844813045133 44.320506831087656 19.49184293663532 10.81880541923189 7 23.474255494653747 34.16861321183808 27.165367685037427 15.19176360847075 8 20.90828634556172 38.93278011881469 24.312297921745124 15.846635613878469 9 22.88433830235181 14.778159548741069 25.217877982162722 37.1196241667444 10-14 20.21180045653004 26.038263532920798 33.21280701830129 20.537128992247872 15-19 19.510563406346925 31.969340582874995 28.87119787695519 19.648898133822886 20-24 19.515244397988695 30.350806363313637 30.49087785019954 19.643071388498132 25-29 19.470329333497386 30.79344829893647 30.058855037323273 19.677367330242873 30-34 19.365331149271885 30.582200186993813 30.129918147034374 19.92255051669993 35-39 19.533492498356335 30.833402204791234 29.99784750995758 19.63525778689485 40-44 19.25897461321048 30.704101642763508 30.356467946658956 19.68045579736706 45-49 19.462047323158014 30.556409615124263 30.312522068916387 19.669020992801332 50-54 19.280718679983845 30.255828450817717 30.63161729979399 19.831835569404447 55-59 19.46849030604386 30.237776108105923 30.69837837104409 19.59535521480613 60-64 19.190231897600533 30.03753166830887 30.877121564672738 19.895114869417856 65-69 19.457731705677244 30.2355715763431 30.474942743983412 19.83175397399624 70-74 19.487661808741922 30.065206174199982 30.487911320590033 19.959220696468066 75-79 19.65990143420297 30.426461595204252 30.16630858107131 19.74732838952147 80-84 19.663802960131438 30.420304123937868 30.02526527770603 19.89062763822466 85-89 19.793450821021963 30.441170937740736 29.935753481857212 19.829624759380092 90-94 19.787369571194173 30.182461937046924 30.28884191386506 19.74132657789384 95-99 20.026012694873558 30.200862104191096 29.872195482240976 19.900929718694368 100-101 20.107640618181875 29.633588621950295 30.555803974114443 19.702966785753382 >>END_MODULE >>Per base GC content fail #Base %GC 1 66.145734932475 2 35.9475138398472 3 38.80473639243337 4 36.756932647888654 5 21.343796099442546 6 36.18765023227702 7 38.66601910312449 8 36.75492195944018 9 60.00396246909621 10-14 40.74892944877791 15-19 39.159461540169815 20-24 39.158315786486824 25-29 39.147696663740255 30-34 39.28788166597181 35-39 39.168750285251186 40-44 38.93943041057754 45-49 39.13106831595935 50-54 39.112554249388296 55-59 39.06384552084999 60-64 39.08534676701839 65-69 39.28948567967348 70-74 39.446882505209985 75-79 39.407229823724435 80-84 39.5544305983561 85-89 39.62307558040205 90-94 39.52869614908801 95-99 39.92694241356792 100-101 39.81060740393526 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 3.0 2 3.0 3 5.5 4 8.5 5 11.0 6 21.0 7 28.5 8 32.0 9 45.5 10 58.0 11 79.5 12 120.5 13 180.5 14 258.0 15 379.0 16 584.5 17 818.0 18 1157.5 19 1637.5 20 2380.5 21 3502.5 22 4882.0 23 6663.5 24 8775.5 25 11279.5 26 14336.0 27 17711.5 28 21493.5 29 25546.5 30 30035.5 31 34631.5 32 39155.5 33 44369.5 34 50230.0 35 56517.0 36 63092.0 37 68705.5 38 72194.5 39 72385.0 40 69228.5 41 65125.0 42 59960.0 43 54515.5 44 49972.0 45 45286.0 46 40919.5 47 36481.0 48 31627.5 49 27049.0 50 23096.0 51 20226.5 52 18010.0 53 15836.5 54 13781.5 55 11920.5 56 10409.5 57 9164.5 58 7788.0 59 6373.5 60 5210.5 61 4322.0 62 3523.5 63 2613.0 64 1892.5 65 1530.0 66 1249.5 67 975.5 68 831.0 69 808.5 70 786.0 71 693.0 72 571.0 73 481.5 74 390.0 75 300.0 76 218.0 77 157.0 78 122.5 79 90.0 80 73.0 81 50.0 82 40.0 83 31.0 84 21.5 85 21.5 86 15.0 87 8.5 88 6.0 89 5.0 90 5.0 91 8.0 92 7.0 93 4.0 94 6.5 95 6.0 96 4.5 97 4.0 98 2.5 99 1.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.03068201178405106 2 0.029140202146661562 3 0.025054406607579384 4 0.023589687452059357 5 0.02991110696535631 6 0.0014647191555200254 7 5.396333730863252E-4 8 0.0023898049379537257 9 4.6254289121685013E-4 10-14 0.006799380500887697 15-19 0.02486938945109264 20-24 0.02064483104464541 25-29 0.0018347534684935057 30-34 0.0016805725047545554 35-39 0.0057509499474628365 40-44 0.013845450543757715 45-49 0.008001992018051508 50-54 0.005057135610637561 55-59 0.0037928517079781707 60-64 0.010715576979857028 65-69 0.015063480157295419 70-74 0.018856331865273593 75-79 0.007261923392104548 80-84 0.010792667461726503 85-89 0.008526207294763936 90-94 0.009898417872040594 95-99 0.009096676860598053 100-101 0.006398509995166428 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1297177.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Duplicate Percentage 26.090862422997944 #Duplication Level Relative count 1 100.0 2 6.861224709749657 3 2.718982581985618 4 1.8789181550915808 5 1.4088892348408188 6 1.0783720832759518 7 0.8418607157612373 8 0.6915712138721402 9 0.5760099634155834 10++ 3.696762488698349 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position CTCTT 291600 2.1109967 5.0428004 1 CTTTG 279725 2.0450711 8.356706 9 ACACA 248350 1.8228959 7.0620813 6 GAGAG 153950 1.764094 5.8903975 7 GCTTT 235935 1.7249222 5.170731 1 CTCCA 151940 1.6826108 5.1785226 1 TACAC 204215 1.4920595 8.785785 5 GACTC 125745 1.4063046 5.1198516 7 CCATG 123045 1.3761083 5.212072 9 GAGTC 120635 1.3625079 6.4467463 9 AAGAC 176945 1.3116353 5.5696993 5 GTCTT 176115 1.2875777 6.5077443 1 GTGTT 165700 1.2234232 6.0850596 1 GACTT 165530 1.2157747 6.0373 7 GATTG 163680 1.214085 5.528713 7 GTTCT 165585 1.2105931 5.6211314 1 TATGA 247310 1.1984087 5.5167327 4 TCATA 248810 1.1938617 5.7211103 2 GTGTA 154295 1.1444725 9.930699 1 TGGAC 98090 1.1078742 7.3084807 5 GTCCA 97470 1.090083 7.7687097 1 TATAC 219065 1.0511367 6.158594 5 ACACT 140545 1.0268663 5.201372 6 GGACT 90350 1.0204551 6.857463 6 AGACT 129890 0.95840997 5.1705503 6 GTATG 127285 0.9441276 5.037136 3 ATACT 158845 0.7621839 5.242528 6 GTATA 154450 0.7484301 7.517251 1 >>END_MODULE