##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename B80a_ACAGTG_L006_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 387699 Filtered Sequences 0 Sequence length 101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.745119280679084 33.0 31.0 34.0 25.0 34.0 2 30.53791214318324 34.0 31.0 34.0 19.0 34.0 3 31.319074849303195 34.0 31.0 34.0 25.0 34.0 4 35.34474166814977 37.0 35.0 37.0 32.0 37.0 5 34.281615376877426 37.0 35.0 37.0 28.0 37.0 6 32.70839749393215 35.0 33.0 37.0 18.0 37.0 7 34.60077534375895 35.0 35.0 37.0 32.0 37.0 8 35.00806037673556 36.0 35.0 37.0 32.0 37.0 9 36.68023131346741 39.0 37.0 39.0 32.0 39.0 10-14 37.84768802602019 39.2 37.6 39.4 34.8 39.4 15-19 39.29315680463453 40.0 39.0 41.0 36.0 41.0 20-24 39.218460197214846 40.0 39.0 41.0 36.0 41.0 25-29 39.06180619501211 40.0 39.0 41.0 36.0 41.0 30-34 38.85567772937253 40.0 38.6 41.0 35.4 41.0 35-39 38.6494956138654 40.0 38.0 41.0 35.0 41.0 40-44 38.3687804198618 40.0 38.0 41.0 34.0 41.0 45-49 38.179245239219085 40.0 38.0 41.0 33.8 41.0 50-54 38.04174320800415 40.0 37.2 41.0 33.6 41.0 55-59 37.50208692826136 39.4 36.2 40.8 33.0 41.0 60-64 36.76902545531457 38.2 35.0 40.0 31.8 41.0 65-69 35.8671201112203 36.6 35.0 39.4 31.0 40.8 70-74 35.18217328391355 35.6 34.4 38.0 31.0 39.6 75-79 34.086485134085976 34.8 33.4 36.2 30.4 38.2 80-84 33.95390908926771 35.0 34.0 35.6 30.8 36.8 85-89 33.56909148592078 35.0 34.0 35.0 30.2 36.0 90-94 33.30880141553112 35.0 34.0 35.0 30.0 35.4 95-99 33.15386317736183 35.0 33.4 35.0 29.8 35.0 100-101 32.864174269214004 35.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 18.0 9 83.0 10 65.0 11 29.0 12 24.0 13 37.0 14 52.0 15 76.0 16 113.0 17 169.0 18 280.0 19 389.0 20 596.0 21 726.0 22 907.0 23 1215.0 24 1442.0 25 1782.0 26 2219.0 27 2725.0 28 3214.0 29 3980.0 30 4991.0 31 6480.0 32 8074.0 33 11604.0 34 17693.0 35 29881.0 36 59189.0 37 116543.0 38 103947.0 39 9151.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 15.136976937938007 17.98845994124217 30.988436726997907 35.88612639382192 2 30.883403710878554 28.14809464726534 22.71281576388226 18.25568587797385 3 13.080520311278828 48.67381497120129 15.095269170550774 23.150395546969108 4 17.853283088168915 23.38824706795736 13.728175723950798 45.03029411992293 5 35.67983327228926 14.350602788768576 30.302709841165033 19.666854097777136 6 31.685405430501497 40.115914665758744 27.342087547298288 0.8565923564414663 7 0.6528260325665013 0.6275486911237842 98.0714420207429 0.6481832555668186 8 47.36199990198582 11.670651716924727 8.71320276812682 32.25414561296263 9 29.22009084366996 9.663424460728555 26.203575454153867 34.91290924144762 10-14 26.851707123309577 18.133036195605353 25.97613096758052 29.03912571350455 15-19 21.661110750002322 25.55468889446028 32.739206200341094 20.044994155196306 20-24 21.242210391647063 27.03066320003302 31.36921711856712 20.357909289752797 25-29 21.81188627611229 28.087812821179586 29.770845458185256 20.32945544452287 30-34 22.192247826856338 27.163354263819045 29.926518878967933 20.717879030356684 35-39 21.9735782846527 27.011765920115593 29.657033749612964 21.357622045618744 40-44 21.360187707472335 27.19874875445648 29.589985907491013 21.851077630580175 45-49 21.584004623776327 26.973645507041454 29.547788482875 21.894561386307224 50-54 21.322688579543577 27.021822054889526 29.448524554972096 22.2069648105948 55-59 21.44900327742632 26.464120928826024 29.559175580980714 22.527700212766945 60-64 22.47902791719027 26.29361173972168 28.9953269219356 22.23203342115245 65-69 22.05413757972566 26.86518557666205 28.816793302167344 22.263883541444958 70-74 22.217303503194245 26.073665212720837 28.751185394087425 22.95784588999749 75-79 22.037442416819424 26.610665212458656 28.109259586964342 23.242632783757582 80-84 23.451859975990992 26.163320073523078 28.82293433014916 21.561885620336778 85-89 22.040655024560067 26.560058277601765 28.66426354105563 22.735023156782535 90-94 22.535081917140737 26.1724155366535 29.106924131839286 22.185578414366482 95-99 22.377347471731287 27.294798391631698 28.146445297627587 22.181408839009432 100-101 22.98530369567881 26.626814468024733 28.840868494193057 21.547013342103398 >>END_MODULE >>Per base GC content fail #Base %GC 1 51.02310333175992 2 49.1390895888524 3 36.23091585824794 4 62.88357720809184 5 55.34668737006639 6 32.541997786942964 7 1.30100928813332 8 79.61614551494846 9 64.13300008511757 10-14 55.89083283681413 15-19 41.70610490519863 20-24 41.60011968139986 25-29 42.141341720635154 30-34 42.91012685721302 35-39 43.33120033027144 40-44 43.211265338052506 45-49 43.47856601008355 50-54 43.52965339013838 55-59 43.976703490193266 60-64 44.711061338342724 65-69 44.31802112117062 70-74 45.17514939319174 75-79 45.28007520057701 80-84 45.013745596327766 85-89 44.775678181342606 90-94 44.72066033150722 95-99 44.55875631074072 100-101 44.53231703778221 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 4.0 3 12.0 4 14.0 5 8.5 6 7.0 7 9.0 8 7.5 9 6.5 10 5.5 11 3.5 12 4.5 13 7.0 14 7.0 15 9.5 16 22.0 17 48.5 18 147.0 19 293.5 20 297.0 21 271.5 22 358.5 23 462.5 24 612.0 25 699.0 26 788.0 27 1074.0 28 1292.0 29 1442.5 30 1905.5 31 2263.0 32 2537.0 33 3124.5 34 3996.0 35 5099.0 36 6353.5 37 8470.5 38 10884.0 39 12533.0 40 14763.0 41 16806.0 42 18675.0 43 22048.0 44 25452.0 45 29059.0 46 30157.5 47 29042.5 48 26234.0 49 20590.5 50 16442.5 51 14277.5 52 12164.0 53 10264.5 54 8308.5 55 6216.5 56 4895.0 57 4513.5 58 3655.5 59 2322.0 60 1616.0 61 1308.5 62 1077.0 63 655.0 64 442.0 65 357.0 66 302.5 67 229.5 68 175.5 69 148.0 70 131.5 71 95.0 72 63.5 73 39.5 74 23.0 75 21.0 76 20.0 77 13.0 78 6.0 79 4.5 80 3.0 81 0.5 82 0.0 83 0.5 84 0.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0015475923332275811 2 0.007222097555062045 3 0.0020634564443034417 4 0.0 5 2.579320555379302E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0010833146332593067 20-24 7.737961666137906E-4 25-29 0.016868756432180634 30-34 0.00897603553271997 35-39 0.0358525557197723 40-44 0.03022963690904542 45-49 0.03533669160869644 50-54 0.03296371669774748 55-59 0.035800969308664714 60-64 0.04126912888606883 65-69 0.04709839334122605 70-74 0.016559237965535118 75-79 0.010936319154808239 80-84 0.0028888390220248184 85-89 0.009595072466011004 90-94 0.016352892321104776 95-99 0.006860992677308943 100-101 0.004255878916375849 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 387699.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Duplicate Percentage 63.661926482425535 #Duplication Level Relative count 1 100.0 2 25.937001594896334 3 10.333599149388624 4 4.470139996455786 5 2.136127355425601 6 1.2109398074310356 7 0.7273022623899816 8 0.5272018429913167 9 0.3588516746411483 10++ 1.9744225884576763 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTCAGATCTCCAGTCCAAGCCAATAATAAATATATTGCAACACCAATCCA 994 0.25638446320470265 No Hit TGACCATCTCCAGTCCAAGCCAATAATAAATATATTGCAACACCAATCCA 770 0.19860768276420623 No Hit ACAGTGTCTCCAGTCCAAGCCAATAATAAATATATTGCAACACCAATCCA 673 0.17358827337702704 No Hit CGATGTTCTCCAGTCCAAGCCAATAATAAATATATTGCAACACCAATCCA 569 0.1467633396010823 No Hit >>END_MODULE >>Kmer Content fail #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position CAGTG 126530 3.933275 163.97636 2 GACCA 99545 3.5506406 222.79326 2 TCAGA 121580 3.285763 209.76965 2 CTCAG 102855 3.2297306 252.30225 1 TGACC 101910 3.200057 193.18152 1 ACCAT 116605 3.1832545 172.15 3 CAGAT 113385 3.064289 211.88159 3 TCTTC 142055 3.0055084 8.278248 7 TTCTT 185410 2.9722228 6.0802736 50-54 ACAGT 102450 2.7687647 148.75719 1 GCAGC 67060 2.7512975 7.956782 8 CACCA 71820 2.5876932 6.176166 40-44 AGCTT 104455 2.4851747 94.83831 2 ATCAG 91570 2.4747272 129.53354 2 GATCA 88835 2.4008121 129.3763 1 AGTGT 101830 2.3984096 129.44289 3 CGATG 74465 2.3147974 141.47276 1 TCTTG 108035 2.2627978 6.7633057 7 CAACA 72925 2.261398 5.1470556 35-39 TGTTG 107605 2.2311752 44.626194 4 TCAGT 92000 2.1888475 114.985954 3 CCATG 69685 2.1881657 95.534035 4 AGATG 81035 2.1680367 97.96242 4 GCGGC 44275 2.0893888 36.036674 8 GATGT 88520 2.0849183 98.80879 2 GGCAG 49615 2.0151477 11.224634 8 TGGCA 63850 1.9848226 15.945933 7 TCAGC 61960 1.9455944 6.1811666 7 CTTTG 90305 1.8914423 44.56064 4 TTTCT 117930 1.8904818 8.922644 5 AGATC 69230 1.8709769 70.41663 4 GCTTT 88920 1.8624334 87.08122 3 TTGGC 67520 1.8477654 22.781807 6 CCATC 57940 1.8378054 65.160286 4 GATGG 58555 1.8019582 34.899113 5 CCTTC 64505 1.8012251 5.618575 9 TAGCT 74940 1.7829589 94.66526 1 CATCG 55695 1.7488682 16.016222 5 CGGCA 42625 1.7487929 19.474224 9 TTTGG 82755 1.7159138 15.461836 5 GTTGG 62860 1.7029766 18.59949 5 CTGGA 53975 1.6778512 5.305263 8 AGCGG 40985 1.6646343 8.310168 8 AGTGG 54040 1.6630145 21.023024 5 ATGTT 91470 1.6488955 76.04886 3 TGTTC 78175 1.6373789 26.860275 4 GGAGG 40675 1.6354655 5.272287 75-79 TGCTG 59650 1.6323936 13.255112 7 CATCA 59490 1.6240454 5.0429263 5 ATGGC 51915 1.6138146 36.594254 6 GCCTT 58225 1.6095482 7.639639 8 ACACC 44645 1.6085708 5.5015755 40-44 TCTGG 57240 1.566441 15.07288 7 TTCTG 74475 1.5598822 6.935942 6 CATGG 49690 1.544649 26.827751 5 GTGTC 55895 1.5296334 52.502975 4 GGTCA 49090 1.5259975 5.755157 60-64 CAGTC 48435 1.5208985 51.44375 4 TCTCT 71730 1.5176172 12.176308 7 CTTTT 94545 1.5156077 6.062424 4 CTTTC 71160 1.5055575 28.260933 4 GTCTT 71140 1.4900305 6.0422926 6 GTGGA 48310 1.4866807 5.028218 6 GTTCT 70925 1.4855273 9.95201 5 TGGCC 40945 1.4788648 40.22463 7 GTGGC 40720 1.4559795 31.638351 6 TGGCG 40690 1.4549068 29.488676 7 GTGTG 52830 1.4312481 70.74636 4 GGCGG 30620 1.4304932 15.085451 8 GCTGG 39740 1.4209387 5.9289403 8 TTCTC 66395 1.4047426 10.258051 6 GTTGT 67195 1.3932792 10.49555 5 GTAGC 44240 1.3752319 7.671531 6 CGGCG 29130 1.3746786 12.7215185 8 TGGTC 50180 1.3732356 5.6788664 7 AGCCT 43020 1.3508629 6.6687813 2 GATGA 50180 1.342532 7.6792574 5 AAAGT 57565 1.3389544 11.3684 1 TGTCC 48290 1.3349091 23.401419 7 GGCCA 32390 1.3288774 8.294945 8 ATCTT 72060 1.3121662 7.2925286 6 GATGC 42185 1.3113507 45.18517 5 ATGGA 48240 1.2906286 5.59081 6 TTTCC 60915 1.2888002 10.278567 5 TTGCT 60870 1.2749249 6.6008234 6 TGTGG 46745 1.2663958 20.096905 5 CATCT 52480 1.2612512 18.433922 5 CAGTT 52825 1.2568029 8.97451 4 GCGGT 34840 1.2457349 6.7264 8 CCGGC 26130 1.2456045 16.502222 9 TTGGG 45945 1.2447225 9.654395 6 CAGTA 45865 1.2395256 15.252132 4 TTGCC 44725 1.2363597 22.744677 6 GTTGC 44850 1.2273738 25.793728 5 AGTAG 45730 1.2234753 5.35732 5 CTCTG 44155 1.220603 6.004489 8 TGCCC 33285 1.2143846 45.709206 7 TTTGC 56920 1.192192 19.934488 5 ATCGG 38300 1.1905828 16.277512 6 ATGGT 50215 1.1827176 8.290739 3 TGTCT 55650 1.1655917 13.7297125 5 CCCTT 41595 1.1614908 5.632114 8 TGGCT 42360 1.159232 12.512081 7 ATCTG 48505 1.1540223 11.869886 6 ATACC 42120 1.1498536 5.281175 6 GAGAT 42970 1.1496334 5.3148346 95-97 GCTGC 31600 1.1413391 5.1309605 8 TTGTC 54410 1.13962 10.32775 6 CCCAG 27485 1.1390685 8.01786 1 GATCT 47425 1.1283271 23.128399 5 TACCG 35785 1.123678 7.307782 7 TGCGG 31425 1.1236286 40.7918 7 GCCCC 23260 1.1200324 16.24926 8 TGCTT 53455 1.1196173 5.34159 7 GCCCA 26950 1.1168964 11.794938 8 AGTTT 61855 1.1150372 8.617882 3 CCATA 40840 1.1149104 18.517204 4 CCATT 46260 1.1117662 13.42344 4 ATGGG 35680 1.098008 13.697042 6 AAGTG 40885 1.0938506 5.526308 2 TGTGC 39910 1.0921848 33.30363 5 TCTGC 39455 1.090678 9.247984 7 TGCAG 34985 1.0875336 11.83134 7 GTTTG 52385 1.0861958 5.820808 4 GCCTC 29545 1.0779327 7.889437 8 TCCAG 34170 1.0729657 16.092346 9 CTGGC 29450 1.0636847 7.354961 8 ATTGC 44580 1.0606394 5.7446094 6 AGGGG 26335 1.0588809 5.322982 75-79 GCGGA 26015 1.0566174 8.704015 9 TTTGT 66550 1.0561271 8.4330015 5 GGGCA 25885 1.0513374 6.4197035 8 TGTCA 43940 1.0454127 6.4713373 7 TGTAG 44360 1.0448143 5.0931435 5 GATCG 33535 1.0424594 19.563158 5 GGGTC 29115 1.0410326 5.0924096 60-64 CCGGA 25340 1.0396343 5.4901795 9 TAGCC 32935 1.0341856 7.475734 1 TGTTT 64955 1.0308149 5.470679 4 ATGTC 43300 1.0301858 17.891344 6 AGATA 44220 1.0285515 21.776749 4 TGCCA 32740 1.0280626 9.439219 7 CTCCA 32270 1.0235758 16.270847 8 TCTCC 36605 1.0221509 25.88606 7 TTGTG 48755 1.0109283 7.027193 6 GGCGA 24805 1.0074724 6.0652413 8 AGTCC 32030 1.0057681 17.569128 5 CATGT 42145 1.0027063 16.818556 5 GTGCC 27745 1.0021029 36.967434 6 GGCCT 27440 0.99108684 11.277606 8 CATTG 41535 0.98819333 5.9983873 5 TGACG 31780 0.9879039 5.4710526 7 GTGTT 47530 0.9855281 8.585441 4 GGCCC 20545 0.97937024 21.67939 8 CCCGG 20495 0.9769869 11.810416 8 CATCC 30695 0.9736181 20.607687 5 TTAGC 40730 0.969041 5.617721 6 GTCTG 35290 0.965753 10.747388 6 TCGGC 26560 0.9593028 26.565418 7 CGGCC 20110 0.958634 10.446785 9 TGGGC 26775 0.9573637 25.414698 7 GTTCC 34565 0.9555008 12.491479 5 TGCCG 26425 0.9544267 29.314772 7 ATGAC 35270 0.95319015 5.1888695 6 GGCGT 26595 0.9509277 7.4545155 8 GATCC 30255 0.95003164 26.155773 5 ATGCC 30225 0.94908947 38.85304 6 CCGCC 19670 0.9471641 8.311403 9 GCCCT 25875 0.9440349 12.754001 8 AGATT 46090 0.94377315 13.412808 4 GATAG 35175 0.9410834 8.75591 5 CCGTC 25775 0.9403864 5.4129324 9 TCCGG 25905 0.93564516 21.907276 7 ATAGC 34445 0.9308941 8.700529 6 TGGGG 26155 0.92581046 5.440391 7 GATTG 39295 0.9255181 6.8860216 5 GTCCC 25350 0.92488056 24.092855 6 GTGCT 33795 0.9248405 10.389141 6 GCCTG 25580 0.92390674 7.792756 8 GTGTA 38825 0.91444814 13.57791 4 CGGCT 25310 0.91415477 9.894174 9 CGCCC 18955 0.9127349 5.399345 70-74 GCGCC 19105 0.91072613 12.133987 8 CCGGT 25155 0.90855646 5.743874 9 GTCTC 32665 0.902978 15.654558 6 GTCCT 32660 0.9028398 6.996301 8 TGCTC 32475 0.8977257 10.052156 7 CCTCG 24370 0.88912576 5.605987 85-89 TCCCC 24080 0.8874508 16.510614 7 CCGGG 18785 0.886486 6.6353245 8 TAGCG 28430 0.88376665 12.419138 7 CATGC 28120 0.8829909 41.791386 5 AGTCT 36885 0.87756133 13.034958 5 ATCTC 36090 0.8673506 19.529238 6 TTTCG 41310 0.8652398 7.8295918 5 TGTGT 41610 0.8627777 12.174437 5 TGCCT 31205 0.8626183 20.157925 7 ATCCT 35635 0.85641557 6.793285 6 GTGCG 23895 0.8543868 25.76142 6 AGTGC 27345 0.85003877 30.535408 5 GTCGG 23690 0.8470568 16.434607 6 GCCGG 17920 0.84566563 16.977278 8 CTTTA 46260 0.84236485 9.402595 4 TTGCG 30575 0.8367213 17.368307 6 CATGA 30935 0.83603454 6.276436 5 ATGCA 30855 0.8338724 7.6260653 6 TTCCC 29380 0.8204013 12.5910225 6 GTGGG 22980 0.81342477 12.3224 6 CCCGC 16720 0.8051136 11.159694 8 GATAC 29600 0.7999554 6.3157454 5 TTCGG 29170 0.79827183 9.606306 6 GCCGC 16585 0.7905989 11.209493 8 CGCTT 28415 0.7854927 5.0666137 2 TCCTG 28360 0.7839724 6.6880355 7 TGTTA 43310 0.7807333 9.133438 4 ATGCT 32655 0.77692187 12.019845 6 GCGTG 21725 0.7767965 5.478202 8 CGAGA 21910 0.773659 5.6105385 95-97 TGCGC 21225 0.76661146 20.909101 7 ATGTG 32470 0.7647683 10.471777 6 CATAG 28270 0.7640115 7.101938 5 TCCCG 20875 0.76161265 24.305128 7 TGTCG 27755 0.75954866 12.697839 5 CCCCG 15760 0.758887 8.708297 8 ATCCG 23935 0.7515784 13.123559 6 TCCCA 23630 0.7495226 6.6590524 7 CCCCT 20275 0.7472203 5.771568 9 ATCCC 23550 0.746985 22.576183 6 GGCGC 15770 0.74420464 7.047172 8 GCGCT 20300 0.733202 6.794583 8 CCCTC 19870 0.7322943 5.235509 9 TCCCT 25915 0.72364545 14.1209 7 GGGCC 15170 0.71588993 16.771355 8 GTTCG 25940 0.70987904 9.035766 5 CCGTG 19645 0.7095445 5.656315 4 TCGCC 19410 0.70816296 12.453282 7 CCCTG 19210 0.7008661 5.9789906 8 AGTCG 22120 0.68761593 13.820814 5 GCCGT 18775 0.6781215 6.09411 8 CCGCA 16360 0.678012 6.731353 9 TTCGC 24525 0.6779591 6.889077 6 CGGGC 14345 0.67695725 7.207335 8 CCCAC 15655 0.65537107 5.8659115 9 ATGCG 20970 0.6518673 26.466026 6 GCCCG 13670 0.6516424 13.590068 8 TGCGT 23755 0.6500839 9.141913 7 TCCGC 17670 0.64468 10.507457 7 TCCGT 23190 0.6410549 5.3746223 3 TGCAC 20275 0.6366515 5.039325 7 TTCCG 22925 0.63372934 8.323185 6 TGCGA 19920 0.61922735 5.049043 7 CTCCC 16770 0.6180461 7.0045033 8 GTGCA 19695 0.6122331 7.4605265 6 TCTCG 22135 0.611891 7.0097036 7 GGCCG 12020 0.5672378 6.887009 8 GTCCG 15660 0.565613 14.779968 6 CGCGG 11720 0.55308044 5.3769007 8 TCGCT 19830 0.5481725 7.1973443 7 ATCGC 16625 0.5220385 12.194863 6 CCCCC 10530 0.512188 5.5892406 9 CCCGT 13860 0.5056743 5.660583 9 TCGGG 13785 0.49289486 11.476487 7 GTCGC 13510 0.48795855 11.750425 6 TCGCG 13500 0.48759738 9.946709 7 GACTA 16120 0.43565142 5.202308 2 >>END_MODULE