##FastQC 0.10.1 >>Basic Statistics pass #Measure Value Filename ZL7_ATCACG_L008_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11713549 Filtered Sequences 0 Sequence length 101 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76244501132833 34.0 31.0 34.0 31.0 34.0 2 32.89702770697421 34.0 33.0 34.0 31.0 34.0 3 32.90063242148046 34.0 33.0 34.0 31.0 34.0 4 36.2069137201714 37.0 37.0 37.0 35.0 37.0 5 36.19106856512915 37.0 37.0 37.0 35.0 37.0 6 36.221593387281686 37.0 37.0 37.0 35.0 37.0 7 36.21764710251351 37.0 37.0 37.0 35.0 37.0 8 36.21088894578406 37.0 37.0 37.0 35.0 37.0 9 38.002513243424346 39.0 39.0 39.0 37.0 39.0 10-14 38.277985228900306 39.4 39.2 39.4 37.0 39.4 15-19 39.4775744225768 41.0 40.0 41.0 37.0 41.0 20-24 39.3921970873217 41.0 40.0 41.0 37.0 41.0 25-29 39.21505845922529 41.0 39.6 41.0 36.4 41.0 30-34 39.00254506981615 41.0 39.0 41.0 36.0 41.0 35-39 38.754551007555435 40.0 39.0 41.0 35.0 41.0 40-44 38.6752573792964 40.0 38.8 41.0 35.0 41.0 45-49 38.53848293117653 40.0 38.2 41.0 34.8 41.0 50-54 37.90013214611558 39.6 37.8 40.4 33.8 40.8 55-59 38.493179838151526 40.0 38.4 41.0 34.8 41.0 60-64 38.13895305342557 40.0 37.4 41.0 34.0 41.0 65-69 37.57055532870524 39.4 36.4 41.0 33.6 41.0 70-74 36.8102438296028 38.4 35.0 40.4 32.8 41.0 75-79 35.929985967532126 36.8 35.0 39.2 32.0 40.8 80-84 35.00834945924587 35.6 35.0 37.6 31.2 39.2 85-89 34.234208368445806 35.0 34.2 36.4 31.0 38.0 90-94 33.69527155262679 35.0 34.0 35.6 30.2 36.6 95-99 33.30655848197673 35.0 34.0 35.0 29.6 36.0 100-101 32.6735999909165 34.5 33.0 35.0 27.5 35.5 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 15.0 4 38.0 5 91.0 6 428.0 7 1927.0 8 4642.0 9 5883.0 10 7095.0 11 8403.0 12 9573.0 13 11314.0 14 13347.0 15 14993.0 16 16518.0 17 18496.0 18 20488.0 19 22418.0 20 24207.0 21 25995.0 22 28235.0 23 30497.0 24 34327.0 25 38308.0 26 44209.0 27 51619.0 28 61325.0 29 71250.0 30 86393.0 31 108435.0 32 141838.0 33 195670.0 34 291549.0 35 482136.0 36 947307.0 37 2261382.0 38 4454362.0 39 2156130.0 40 22706.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 17.769464769783173 32.81642796677736 30.412073276841113 19.002033986598352 2 20.992143610863092 32.855556077700925 27.879612264340363 18.272688047095613 3 20.651447210427175 31.073666037407587 28.87432694743038 19.400559804734858 4 20.498602318306723 29.75526876821231 29.370054995503985 20.37607391797698 5 20.343197040759613 30.062946655326154 30.0176814527584 19.57617485115583 6 20.53554455176659 30.15569748397498 28.98866237009909 20.320095594159344 7 20.582907431633878 30.122684279578216 29.72075511521759 19.573653173570317 8 19.916460519712388 30.343957659391368 29.88306932516239 19.85651249573386 9 19.97216314328422 29.964364723467863 30.22370275464446 19.83976937860346 10-14 19.997699657270115 30.13148151586812 30.011672710461585 19.85914611640018 15-19 20.047763147524478 29.864712353326382 30.075534186693144 20.011990312456 20-24 20.238699618240656 29.69338638262627 29.872931258846798 20.194982740286278 25-29 20.40820919532795 29.722981339350703 29.628925227320487 20.23988423800086 30-34 20.554120518416582 29.611588846519858 29.5593332692419 20.274957365821656 35-39 20.579360642127973 29.544393143174702 29.50016919953108 20.376077015166246 40-44 20.640630956959438 29.53387894765885 29.45055762199874 20.374932473382973 45-49 20.657134555610128 29.454510763797444 29.395424861995558 20.49292981859687 50-54 20.619656827690395 29.47592938258923 29.42723187814375 20.477181911576633 55-59 20.680616731472416 29.474147228486498 29.36886233471058 20.476373705330506 60-64 20.608076541255013 29.500034558866865 29.35576516618904 20.53612373368908 65-69 20.64256431099023 29.491693510858564 29.303675003758677 20.562067174392524 70-74 20.666488426406996 29.5257517892685 29.29863721692147 20.509122567403033 75-79 20.6775056395202 29.487804528496415 29.312223916150405 20.52246591583299 80-84 20.67346398486946 29.535447349243032 29.296932399177823 20.494156266709687 85-89 20.650556497617767 29.493176451024887 29.288210881927025 20.568056169430324 90-94 20.65704611864613 29.486044512583277 29.26788459510329 20.589024773667305 95-99 20.73750498783193 29.515964495279235 29.17855118004904 20.567979336839798 100-101 20.831118330096192 29.486763730041105 29.09462967900615 20.58748826085655 >>END_MODULE >>Per base GC content pass #Base %GC 1 36.771498756381526 2 39.2648316579587 3 40.05200701516203 4 40.874676236283705 5 39.919371891915446 6 40.85564014592593 7 40.15656060520419 8 39.77297301544625 9 39.81193252188768 10-14 39.856845773670294 15-19 40.05975345998047 20-24 40.43368235852694 25-29 40.64809343332881 30-34 40.82907788423824 35-39 40.95543765729422 40-44 41.01556343034241 45-49 41.150064374207 50-54 41.09683873926703 55-59 41.15699043680292 60-64 41.14420027494409 65-69 41.204631485382755 70-74 41.17561099381003 75-79 41.19997155535319 80-84 41.167620251579145 85-89 41.21861266704809 90-94 41.24607089231343 95-99 41.305484324671724 100-101 41.41860659095274 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 258.0 1 276.5 2 328.5 3 423.0 4 520.0 5 613.5 6 813.0 7 1081.0 8 1401.5 9 1715.5 10 2056.5 11 2675.0 12 3540.0 13 4505.5 14 5693.5 15 7347.5 16 9748.0 17 13450.5 18 18962.5 19 27032.5 20 38126.5 21 51996.5 22 68655.0 23 88088.5 24 110527.5 25 136949.0 26 166012.5 27 195695.5 28 227051.0 29 259584.0 30 291479.5 31 321056.5 32 349489.5 33 377116.0 34 401743.5 35 424789.5 36 446350.0 37 463129.0 38 470702.0 39 469459.0 40 461376.5 41 446273.5 42 423060.0 43 395625.0 44 369633.0 45 346744.5 46 328489.5 47 314691.5 48 302049.5 49 288260.5 50 272905.5 51 255090.5 52 235279.5 53 216806.5 54 200683.0 55 185491.5 56 171651.0 57 157491.0 58 141870.0 59 124877.5 60 107545.5 61 90557.0 62 75265.0 63 62315.5 64 51300.0 65 42394.5 66 35146.5 67 28820.0 68 23244.0 69 18682.5 70 15083.0 71 12249.0 72 9812.0 73 7934.5 74 6417.5 75 5333.0 76 4451.5 77 3671.5 78 3136.0 79 2643.0 80 2159.0 81 1687.0 82 1318.0 83 1020.0 84 725.5 85 486.5 86 335.5 87 243.5 88 190.0 89 146.0 90 123.0 91 99.5 92 76.5 93 65.0 94 55.0 95 51.0 96 41.0 97 24.0 98 15.5 99 14.0 100 7.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0973829537060032 2 0.08280154887301876 3 0.09302902134955 4 0.09353271156333576 5 0.07849030212790334 6 0.03454973381679626 7 0.013104482680697369 8 0.043308821263307984 9 0.05164105259644195 10-14 0.04890405119746372 15-19 0.020728132865624242 20-24 0.015581955562741915 25-29 0.008248567534911922 30-34 0.009518891328324149 35-39 0.011453403234152176 40-44 0.02545428375294285 45-49 0.023927846291503966 50-54 0.03516782146896726 55-59 0.03890195874879595 60-64 0.026427515691444158 65-69 0.028333001381562497 70-74 0.02998408082810769 75-79 0.044348642755496215 80-84 0.04712320749245169 85-89 0.032248125653463355 90-94 0.0440976513608301 95-99 0.034597541701494566 100-101 0.05511139279820317 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 1.1713549E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 6.432454247861243 #Duplication Level Relative count 1 100.0 2 3.570991155060679 3 0.7407170737681784 4 0.4835162494475241 5 0.3461294737234479 6 0.29341129234095353 7 0.21513278059118915 8 0.1682721749178608 9 0.12833415871900145 10++ 0.5548721717228196 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position CCCAG 2087775 3.5921357 3.9144487 25-29 CTGGG 2044450 3.4794521 3.6542368 85-89 GGGGG 1346080 3.2589278 4.1854897 95-97 CCAGG 1862880 3.1755185 3.4638095 25-29 GGAGG 1888705 3.160206 3.433234 70-74 AAAAA 8184745 3.1242514 4.2971163 1 CCTCC 1779760 3.114681 3.5366843 3 CCTGG 1797905 3.0884492 3.256464 3 TTTTT 7751730 3.075098 3.6613379 10-14 >>END_MODULE