FastQCFastQC Report
Thu 31 Jul 2014
ZL7_ATCACG_L008_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL7_ATCACG_L008_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 11713549
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2096920 3.5971854 3.9027205 25-29
CTGGG 2046250 3.4815001 3.6577444 85-89
CCAGG 1871305 3.204371 3.4748333 25-29
GGAGG 1840955 3.1410575 3.4152613 70-74
CCTCC 1815100 3.1049638 3.453644 70-74
CCTGG 1806360 3.0788944 3.2319305 85-89