FastQCFastQC Report
Thu 31 Jul 2014
ZL7_ATCACG_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL7_ATCACG_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 11651783
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2086885 3.5965111 3.9333258 25-29
CTGGG 2038985 3.4836276 3.681101 65-69
CCAGG 1867330 3.2113886 3.4641814 25-29
GGAGG 1834085 3.1410067 3.4236515 70-74
CCTCC 1810145 3.1121788 3.4183154 65-69
CCTGG 1792805 3.0694597 3.2989151 3