FastQCFastQC Report
Thu 31 Jul 2014
ZL6_CTTGTA_L008_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL6_CTTGTA_L008_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 15696073
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2822985 3.5962234 3.9531746 25-29
CTGGG 2764465 3.4903693 3.6742287 1
CCAGG 2517000 3.2005134 3.4158201 25-29
GGAGG 2487405 3.151227 3.424814 70-74
CCTCC 2460830 3.1242576 3.408771 70-74
CCTGG 2444605 3.0922217 3.2925487 3