FastQCFastQC Report
Thu 31 Jul 2014
ZL6_CTTGTA_L007_R1_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename ZL6_CTTGTA_L007_R1_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 15628660
Filtered Sequences 0
Sequence length 101
%GC 40

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CCCAG 2821550 3.6084883 3.9488034 25-29
CTGGG 2759935 3.4945424 3.7550786 1
CCAGG 2514330 3.208032 3.432748 25-29
GGAGG 2482835 3.1529858 3.4145877 70-74
CCTCC 2449225 3.1230829 3.4134126 95-97
CCTGG 2435075 3.0904727 3.2656522 3