FastQCFastQC Report
Wed 5 Nov 2014
Manjouma_TAAGGCGA-AGAGTAGA_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameManjouma_TAAGGCGA-AGAGTAGA_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42483910
Sequences flagged as poor quality0
Sequence length93
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG184300.016.748275
CTATACT215150.013.942634
TACACTG140200.013.6750065
GTGTAGG145000.013.4640131
ATGCCGT166050.013.148087586-87
GTATTAG191150.013.08585551
TATGCCG199050.013.02212386-87
TATACAG179600.012.9020245
GTATAGG150500.012.8561521
GTATAAG191550.012.6262781
GTATATA360000.012.5407011
CTTACAC127900.012.4747683
GTATAGA227050.012.321911
TTATACT306700.012.3039044
ACTGTGC123950.012.2760448
TAATACT275450.012.0109914
TAGACAG127600.011.9248895
GTATAAT293600.011.9185671
GTACTAG145900.011.8576791
TATACCG74100.011.8514145
Produced by FastQC (version 0.11.2)