FastQCFastQC Report
Wed 5 Nov 2014
DP4A_TAGGCATG-AGAGTAGA_L008_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameDP4A_TAGGCATG-AGAGTAGA_L008_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53263242
Sequences flagged as poor quality0
Sequence length93
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG236200.016.0689955
CTATACT272250.015.0271334
TATACAG233950.014.4209235
GTGTAGG181700.014.1062771
TCTATAC279050.013.6949753
GTATAAG254300.013.4672971
CAGCGCG55200.013.2319739
TACACCG94000.013.1816985
GTATTAG241850.013.1349611
TACACTG165400.013.0639735
GTATAGG194250.012.9260811
CTTACAC165000.012.7531013
GTATATA466200.012.6385841
ACTGTGC148850.012.501138
GTATAGA285800.012.3788531
ACACCGT90300.012.3737046
TACACAG143850.012.3009575
TTATACT420450.012.274134
TAGACTG162650.012.2691085
GTATAAT374650.012.1611031
Produced by FastQC (version 0.11.2)