FastQCFastQC Report
Wed 5 Nov 2014
DP18_GGACTCCT-CTCTCTAT_L006_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameDP18_GGACTCCT-CTCTCTAT_L006_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42852012
Sequences flagged as poor quality0
Sequence length93
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACTG187900.017.6780955
CTATACT216050.014.0666864
GTATTAG193750.013.8144541
TACACTG130150.013.46262555
ATACTGT201000.013.4327346
TTATACT344400.013.3185894
TATACAG185400.013.2497485
TATACCG67700.013.16545
GTGTAGG144800.013.1044331
TACACCG78700.013.0378565
TCTATAC228300.012.8929313
CTTACAC138450.012.8439683
GTATAGG143100.012.59102251
TAGACTG123550.012.5278395
ATTATAC287100.012.4633723
GTATAAG196900.012.3777761
GTATAGA240150.012.2689231
ACACCGT67900.012.1021056
CCTATAC149050.012.0180543
ACTGTGC127800.011.9751438
Produced by FastQC (version 0.11.2)