| Lane | Sample ID | Sample Ref | Index | Description | Control | Project | Yield (Mbases) | % PF | # Reads | % of raw clusters per lane | % Perfect Index Reads | % One Mismatch Reads (Index) | % of >= Q30 Bases (PF) | Mean Quality Score (PF) |
|---|
| 1 | Manjouma | TAAGGCGA-AGAGTAGA | N | lane1 | 7,902 | 100.00 | 84,967,820 | 26.72 | 94.90 | 4.80 | 92.50 | 36.23 | ||
| 1 | PakC | GGACTCCT-CTCTCTAT | N | lane1 | 6,976 | 100.00 | 75,015,236 | 23.59 | 96.99 | 2.84 | 93.07 | 36.38 | ||
| 1 | PakG | TAGGCATG-TATCCTCT | N | lane1 | 6,288 | 100.00 | 67,613,230 | 21.26 | 96.53 | 3.15 | 93.42 | 36.46 | ||
| 1 | PakO | AGGCAGAA-TAGATCGC | N | lane1 | 7,486 | 100.00 | 80,499,632 | 25.31 | 96.07 | 3.73 | 92.91 | 36.33 | ||
| 1 | lane1 | unknown | Undetermined | Clusters with unmatched barcodes for lane 1 | N | Undetermined_indices | 923 | 100.00 | 9,929,446 | 3.12 | 0.00 | 0.00 | 76.54 | 32.14 |
| 2 | Barmel_L2 | CGTACTAG-CTCTCTAT | N | lane2 | 6,133 | 100.00 | 65,943,990 | 20.38 | 96.39 | 3.33 | 92.04 | 36.12 | ||
| 2 | Hamria_L1 | TAAGGCGA-TAGATCGC | N | lane2 | 6,187 | 100.00 | 66,531,862 | 20.56 | 96.66 | 3.19 | 92.92 | 36.32 | ||
| 2 | Kamla_M3 | TCCTGAGC-TATCCTCT | N | lane2 | 6,287 | 100.00 | 67,607,452 | 20.90 | 96.33 | 3.43 | 91.99 | 36.11 | ||
| 2 | Khalte_M4 | GGACTCCT-AGAGTAGA | N | lane2 | 10,411 | 100.00 | 111,948,066 | 34.60 | 94.08 | 5.33 | 91.64 | 36.03 | ||
| 2 | lane2 | unknown | Undetermined | Clusters with unmatched barcodes for lane 2 | N | Undetermined_indices | 1,070 | 100.00 | 11,509,112 | 3.56 | 0.00 | 0.00 | 72.60 | 31.27 |
| 3 | Boufkouss_Rarass_M12 | GGACTCCT-TAGATCGC | N | lane3 | 6,485 | 100.00 | 69,728,776 | 22.29 | 95.51 | 4.36 | 91.97 | 36.07 | ||
| 3 | BouslKhine_M5 | AGGCAGAA-AGAGTAGA | N | lane3 | 7,605 | 100.00 | 81,778,016 | 26.14 | 92.73 | 6.86 | 91.38 | 35.94 | ||
| 3 | Jihl_M10 | TAGGCATG-CTCTCTAT | N | lane3 | 6,475 | 100.00 | 69,625,070 | 22.26 | 96.71 | 3.05 | 92.51 | 36.23 | ||
| 3 | Raslatmar_M8 | GGACTCCT-TATCCTCT | N | lane3 | 7,435 | 100.00 | 79,948,390 | 25.56 | 97.03 | 2.82 | 92.30 | 36.18 | ||
| 3 | lane3 | unknown | Undetermined | Clusters with unmatched barcodes for lane 3 | N | Undetermined_indices | 1,093 | 100.00 | 11,752,434 | 3.76 | 0.00 | 0.00 | 73.25 | 31.50 |
| 4 | PhiX | Undetermined | Y | lane4 | 2,735 | 100.00 | 29,411,112 | 100.00 | 0.00 | 0.00 | 89.75 | 35.45 | ||
| 5 | DP6A | TAGGCATG-TAGATCGC | N | lane5 | 10,013 | 100.00 | 107,661,654 | 32.74 | 34.70 | 38.44 | 90.48 | 35.73 | ||
| 5 | lane5 | unknown | Undetermined | Clusters with unmatched barcodes for lane 5 | N | Undetermined_indices | 20,573 | 100.00 | 221,220,362 | 67.26 | 0.00 | 0.00 | 91.83 | 36.04 |
| 6 | DP18 | GGACTCCT-CTCTCTAT | N | lane6 | 7,970 | 100.00 | 85,704,024 | 25.69 | 36.82 | 38.57 | 89.88 | 35.60 | ||
| 6 | lane6 | unknown | Undetermined | Clusters with unmatched barcodes for lane 6 | N | Undetermined_indices | 23,055 | 100.00 | 247,899,976 | 74.31 | 0.00 | 0.00 | 91.70 | 36.02 |
| 7 | DP2A | AGGCAGAA-TATCCTCT | N | lane7 | 41 | 100.00 | 435,730 | 0.14 | 3.07 | 30.85 | 92.62 | 36.27 | ||
| 7 | lane7 | unknown | Undetermined | Clusters with unmatched barcodes for lane 7 | N | Undetermined_indices | 28,906 | 100.00 | 310,817,668 | 99.86 | 0.00 | 0.00 | 91.71 | 36.03 |
| 8 | DP4A | TAGGCATG-AGAGTAGA | N | lane8 | 9,907 | 100.00 | 106,526,484 | 34.40 | 15.06 | 46.73 | 91.85 | 36.07 | ||
| 8 | lane8 | unknown | Undetermined | Clusters with unmatched barcodes for lane 8 | N | Undetermined_indices | 18,890 | 100.00 | 203,117,500 | 65.60 | 0.00 | 0.00 | 91.91 | 36.04 |
| SampleID | Recipe | Operator | Directory |
|---|
| Manjouma | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane1/Sample_Manjouma | ||
| PakC | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane1/Sample_PakC | ||
| PakG | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane1/Sample_PakG | ||
| PakO | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane1/Sample_PakO | ||
| lane1 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane1 | ||
| Barmel_L2 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane2/Sample_Barmel_L2 | ||
| Hamria_L1 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane2/Sample_Hamria_L1 | ||
| Kamla_M3 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane2/Sample_Kamla_M3 | ||
| Khalte_M4 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane2/Sample_Khalte_M4 | ||
| lane2 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane2 | ||
| Boufkouss_Rarass_M12 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane3/Sample_Boufkouss_Rarass_M12 | ||
| BouslKhine_M5 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane3/Sample_BouslKhine_M5 | ||
| Jihl_M10 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane3/Sample_Jihl_M10 | ||
| Raslatmar_M8 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane3/Sample_Raslatmar_M8 | ||
| lane3 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane3 | ||
| PhiX | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane4/Sample_PhiX | ||
| DP6A | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane5/Sample_DP6A | ||
| lane5 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane5 | ||
| DP18 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane6/Sample_DP18 | ||
| lane6 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane6 | ||
| DP2A | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane7/Sample_DP2A | ||
| lane7 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane7 | ||
| DP4A | /share/manual/C420BACXX/bcl2fastq/Unaligned/Project_lane8/Sample_DP4A | ||
| lane8 | /share/manual/C420BACXX/bcl2fastq/Unaligned/Undetermined_indices/Sample_lane8 |
bcl2fastq-1.8.4