[2024-08-05 15:14:38,775] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-08-05 15:14:38,776] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-08-05 15:14:38,776] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-08-05 15:14:38,776] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-08-05 15:14:39,148] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-08-05 15:14:39,149] multiqc [INFO ] This is MultiQC v1.9 [2024-08-05 15:14:39,149] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-08-05 15:14:39,149] multiqc [DEBUG ] Working dir : /vast/gencore/ONT/work/4d/589caa4080e509d22646888d169211 [2024-08-05 15:14:39,149] multiqc [INFO ] Template : default [2024-08-05 15:14:39,149] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-08-05 15:14:39,149] multiqc [INFO ] Searching : /vast/gencore/ONT/work/4d/589caa4080e509d22646888d169211/1 [2024-08-05 15:14:39,150] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-08-05 15:14:39,150] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-49374406/tmp5enh3hsr [2024-08-05 15:14:39,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA05_merged_fastqc.html [2024-08-05 15:14:39,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA05_merged_fastqc.html [2024-08-05 15:14:39,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: AA05_pycoqc.html [2024-08-05 15:14:39,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA05_pycoqc.json [2024-08-05 15:14:40,164] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-08-05 15:14:40,167] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-08-05 15:14:40,171] multiqc [DEBUG ] No samples found: custom_content [2024-08-05 15:14:40,178] multiqc [DEBUG ] No samples found: conpair [2024-08-05 15:14:40,186] multiqc [DEBUG ] No samples found: peddy [2024-08-05 15:14:40,193] multiqc [DEBUG ] No samples found: somalier [2024-08-05 15:14:40,201] multiqc [DEBUG ] No samples found: methylQA [2024-08-05 15:14:40,215] multiqc [DEBUG ] No samples found: mosdepth [2024-08-05 15:14:40,222] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-08-05 15:14:40,227] multiqc [DEBUG ] No samples found: qualimap [2024-08-05 15:14:40,235] multiqc [DEBUG ] No samples found: preseq [2024-08-05 15:14:40,243] multiqc [DEBUG ] No samples found: quast [2024-08-05 15:14:40,250] multiqc [DEBUG ] No samples found: qorts [2024-08-05 15:14:40,258] multiqc [DEBUG ] No samples found: rna_seqc [2024-08-05 15:14:40,265] multiqc [DEBUG ] No samples found: rockhopper [2024-08-05 15:14:40,272] multiqc [DEBUG ] No samples found: rsem [2024-08-05 15:14:40,289] multiqc [DEBUG ] No samples found: rseqc [2024-08-05 15:14:40,296] multiqc [DEBUG ] No samples found: busco [2024-08-05 15:14:40,304] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-08-05 15:14:40,312] multiqc [DEBUG ] No samples found: disambiguate [2024-08-05 15:14:40,320] multiqc [DEBUG ] No samples found: supernova [2024-08-05 15:14:40,342] multiqc [DEBUG ] No samples found: deeptools [2024-08-05 15:14:40,349] multiqc [DEBUG ] No samples found: sargasso [2024-08-05 15:14:40,357] multiqc [DEBUG ] No samples found: verifybamid [2024-08-05 15:14:40,365] multiqc [DEBUG ] No samples found: mirtrace [2024-08-05 15:14:40,373] multiqc [DEBUG ] No samples found: happy [2024-08-05 15:14:40,381] multiqc [DEBUG ] No samples found: mirtop [2024-08-05 15:14:40,391] multiqc [DEBUG ] No samples found: homer [2024-08-05 15:14:40,399] multiqc [DEBUG ] No samples found: macs2 [2024-08-05 15:14:40,407] multiqc [DEBUG ] No samples found: theta2 [2024-08-05 15:14:40,414] multiqc [DEBUG ] No samples found: snpeff [2024-08-05 15:14:40,425] multiqc [DEBUG ] No samples found: gatk [2024-08-05 15:14:40,432] multiqc [DEBUG ] No samples found: htseq [2024-08-05 15:14:40,442] multiqc [DEBUG ] No samples found: bcftools [2024-08-05 15:14:40,450] multiqc [DEBUG ] No samples found: featureCounts [2024-08-05 15:14:40,461] multiqc [DEBUG ] No samples found: fgbio [2024-08-05 15:14:40,484] multiqc [DEBUG ] No samples found: dragen [2024-08-05 15:14:40,491] multiqc [DEBUG ] No samples found: dedup [2024-08-05 15:14:40,499] multiqc [DEBUG ] No samples found: damageprofiler [2024-08-05 15:14:40,537] multiqc [DEBUG ] No samples found: biobambam2 [2024-08-05 15:14:40,544] multiqc [DEBUG ] No samples found: mtnucratio [2024-08-05 15:14:40,548] multiqc [DEBUG ] No samples found: picard [2024-08-05 15:14:40,555] multiqc [DEBUG ] No samples found: prokka [2024-08-05 15:14:40,562] multiqc [DEBUG ] No samples found: samblaster [2024-08-05 15:14:40,577] multiqc [DEBUG ] No samples found: samtools [2024-08-05 15:14:40,584] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-08-05 15:14:40,593] multiqc [DEBUG ] No samples found: bamtools [2024-08-05 15:14:40,600] multiqc [DEBUG ] No samples found: jellyfish [2024-08-05 15:14:40,612] multiqc [DEBUG ] No samples found: vcftools [2024-08-05 15:14:40,619] multiqc [DEBUG ] No samples found: longranger [2024-08-05 15:14:40,627] multiqc [DEBUG ] No samples found: stacks [2024-08-05 15:14:40,635] multiqc [DEBUG ] No samples found: varscan2 [2024-08-05 15:14:40,658] multiqc [DEBUG ] No samples found: bbmap [2024-08-05 15:14:40,666] multiqc [DEBUG ] No samples found: bismark [2024-08-05 15:14:40,675] multiqc [DEBUG ] No samples found: biscuit [2024-08-05 15:14:40,683] multiqc [DEBUG ] No samples found: hicexplorer [2024-08-05 15:14:40,691] multiqc [DEBUG ] No samples found: hicup [2024-08-05 15:14:40,699] multiqc [DEBUG ] No samples found: hicpro [2024-08-05 15:14:40,706] multiqc [DEBUG ] No samples found: salmon [2024-08-05 15:14:40,714] multiqc [DEBUG ] No samples found: kallisto [2024-08-05 15:14:40,722] multiqc [DEBUG ] No samples found: slamdunk [2024-08-05 15:14:40,729] multiqc [DEBUG ] No samples found: star [2024-08-05 15:14:40,736] multiqc [DEBUG ] No samples found: hisat2 [2024-08-05 15:14:40,745] multiqc [DEBUG ] No samples found: tophat [2024-08-05 15:14:40,753] multiqc [DEBUG ] No samples found: bowtie2 [2024-08-05 15:14:40,761] multiqc [DEBUG ] No samples found: bowtie1 [2024-08-05 15:14:40,768] multiqc [DEBUG ] No samples found: snpsplit [2024-08-05 15:14:40,776] multiqc [DEBUG ] No samples found: kat [2024-08-05 15:14:40,783] multiqc [DEBUG ] No samples found: leehom [2024-08-05 15:14:40,791] multiqc [DEBUG ] No samples found: adapterRemoval [2024-08-05 15:14:40,798] multiqc [DEBUG ] No samples found: clipandmerge [2024-08-05 15:14:40,806] multiqc [DEBUG ] No samples found: cutadapt [2024-08-05 15:14:40,813] multiqc [DEBUG ] No samples found: flexbar [2024-08-05 15:14:40,822] multiqc [DEBUG ] No samples found: kaiju [2024-08-05 15:14:40,829] multiqc [DEBUG ] No samples found: kraken [2024-08-05 15:14:40,837] multiqc [DEBUG ] No samples found: malt [2024-08-05 15:14:40,845] multiqc [DEBUG ] No samples found: trimmomatic [2024-08-05 15:14:40,852] multiqc [DEBUG ] No samples found: sickle [2024-08-05 15:14:40,859] multiqc [DEBUG ] No samples found: skewer [2024-08-05 15:14:40,866] multiqc [DEBUG ] No samples found: sortmerna [2024-08-05 15:14:40,873] multiqc [DEBUG ] No samples found: biobloomtools [2024-08-05 15:14:40,881] multiqc [DEBUG ] No samples found: fastq_screen [2024-08-05 15:14:40,889] multiqc [DEBUG ] No samples found: afterqc [2024-08-05 15:14:40,898] multiqc [DEBUG ] No samples found: fastp [2024-08-05 15:14:40,910] multiqc.modules.fastqc.fastqc [INFO ] Found 1 reports [2024-08-05 15:14:41,071] multiqc.modules.pycoqc.pycoqc [INFO ] Found 1 reports [2024-08-05 15:14:41,084] multiqc [DEBUG ] No samples found: minionqc [2024-08-05 15:14:41,091] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-08-05 15:14:41,099] multiqc [DEBUG ] No samples found: clusterflow [2024-08-05 15:14:41,106] multiqc [DEBUG ] No samples found: bcl2fastq [2024-08-05 15:14:41,114] multiqc [DEBUG ] No samples found: interop [2024-08-05 15:14:41,122] multiqc [DEBUG ] No samples found: ivar [2024-08-05 15:14:41,130] multiqc [DEBUG ] No samples found: flash [2024-08-05 15:14:41,137] multiqc [DEBUG ] No samples found: seqyclean [2024-08-05 15:14:41,141] multiqc [INFO ] Compressing plot data [2024-08-05 15:14:41,201] multiqc [INFO ] Report : 1/multiqc_report.html [2024-08-05 15:14:41,201] multiqc [INFO ] Data : 1/multiqc_data [2024-08-05 15:14:41,201] multiqc [DEBUG ] Moving data file from '/state/partition1/job-49374406/tmp5enh3hsr/multiqc_data' to '1/multiqc_data' [2024-08-05 15:14:41,387] multiqc [INFO ] MultiQC complete