[2024-07-30 21:25:33,239] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-07-30 21:25:33,239] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-07-30 21:25:33,240] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-07-30 21:25:33,240] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-07-30 21:25:33,609] multiqc [WARNING] MultiQC Version v1.23 now available! [2024-07-30 21:25:33,609] multiqc [INFO ] This is MultiQC v1.9 [2024-07-30 21:25:33,609] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-07-30 21:25:33,609] multiqc [DEBUG ] Working dir : /vast/gencore/ONT/work/50/ede4a242bd3f312ad25f757380a23e [2024-07-30 21:25:33,609] multiqc [INFO ] Template : default [2024-07-30 21:25:33,609] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-07-30 21:25:33,609] multiqc [INFO ] Searching : /vast/gencore/ONT/work/50/ede4a242bd3f312ad25f757380a23e/1 [2024-07-30 21:25:33,610] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-07-30 21:25:33,610] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-49173774/tmp4nv0p8bu [2024-07-30 21:25:33,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA03_merged_fastqc.html [2024-07-30 21:25:33,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA03_merged_fastqc.html [2024-07-30 21:25:33,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,817] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,820] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: AA03_pycoqc.html [2024-07-30 21:25:33,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA03_pycoqc.json [2024-07-30 21:25:34,359] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-07-30 21:25:34,360] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-07-30 21:25:34,362] multiqc [DEBUG ] No samples found: custom_content [2024-07-30 21:25:34,367] multiqc [DEBUG ] No samples found: conpair [2024-07-30 21:25:34,374] multiqc [DEBUG ] No samples found: peddy [2024-07-30 21:25:34,379] multiqc [DEBUG ] No samples found: somalier [2024-07-30 21:25:34,385] multiqc [DEBUG ] No samples found: methylQA [2024-07-30 21:25:34,395] multiqc [DEBUG ] No samples found: mosdepth [2024-07-30 21:25:34,400] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-07-30 21:25:34,404] multiqc [DEBUG ] No samples found: qualimap [2024-07-30 21:25:34,410] multiqc [DEBUG ] No samples found: preseq [2024-07-30 21:25:34,416] multiqc [DEBUG ] No samples found: quast [2024-07-30 21:25:34,422] multiqc [DEBUG ] No samples found: qorts [2024-07-30 21:25:34,427] multiqc [DEBUG ] No samples found: rna_seqc [2024-07-30 21:25:34,433] multiqc [DEBUG ] No samples found: rockhopper [2024-07-30 21:25:34,438] multiqc [DEBUG ] No samples found: rsem [2024-07-30 21:25:34,454] multiqc [DEBUG ] No samples found: rseqc [2024-07-30 21:25:34,459] multiqc [DEBUG ] No samples found: busco [2024-07-30 21:25:34,465] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-07-30 21:25:34,478] multiqc [DEBUG ] No samples found: disambiguate [2024-07-30 21:25:34,483] multiqc [DEBUG ] No samples found: supernova [2024-07-30 21:25:34,500] multiqc [DEBUG ] No samples found: deeptools [2024-07-30 21:25:34,505] multiqc [DEBUG ] No samples found: sargasso [2024-07-30 21:25:34,510] multiqc [DEBUG ] No samples found: verifybamid [2024-07-30 21:25:34,516] multiqc [DEBUG ] No samples found: mirtrace [2024-07-30 21:25:34,521] multiqc [DEBUG ] No samples found: happy [2024-07-30 21:25:34,526] multiqc [DEBUG ] No samples found: mirtop [2024-07-30 21:25:34,533] multiqc [DEBUG ] No samples found: homer [2024-07-30 21:25:34,539] multiqc [DEBUG ] No samples found: macs2 [2024-07-30 21:25:34,543] multiqc [DEBUG ] No samples found: theta2 [2024-07-30 21:25:34,549] multiqc [DEBUG ] No samples found: snpeff [2024-07-30 21:25:34,556] multiqc [DEBUG ] No samples found: gatk [2024-07-30 21:25:34,561] multiqc [DEBUG ] No samples found: htseq [2024-07-30 21:25:34,567] multiqc [DEBUG ] No samples found: bcftools [2024-07-30 21:25:34,573] multiqc [DEBUG ] No samples found: featureCounts [2024-07-30 21:25:34,579] multiqc [DEBUG ] No samples found: fgbio [2024-07-30 21:25:34,594] multiqc [DEBUG ] No samples found: dragen [2024-07-30 21:25:34,599] multiqc [DEBUG ] No samples found: dedup [2024-07-30 21:25:34,605] multiqc [DEBUG ] No samples found: damageprofiler [2024-07-30 21:25:34,632] multiqc [DEBUG ] No samples found: biobambam2 [2024-07-30 21:25:34,636] multiqc [DEBUG ] No samples found: mtnucratio [2024-07-30 21:25:34,639] multiqc [DEBUG ] No samples found: picard [2024-07-30 21:25:34,646] multiqc [DEBUG ] No samples found: prokka [2024-07-30 21:25:34,651] multiqc [DEBUG ] No samples found: samblaster [2024-07-30 21:25:34,661] multiqc [DEBUG ] No samples found: samtools [2024-07-30 21:25:34,666] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-07-30 21:25:34,672] multiqc [DEBUG ] No samples found: bamtools [2024-07-30 21:25:34,677] multiqc [DEBUG ] No samples found: jellyfish [2024-07-30 21:25:34,686] multiqc [DEBUG ] No samples found: vcftools [2024-07-30 21:25:34,691] multiqc [DEBUG ] No samples found: longranger [2024-07-30 21:25:34,698] multiqc [DEBUG ] No samples found: stacks [2024-07-30 21:25:34,703] multiqc [DEBUG ] No samples found: varscan2 [2024-07-30 21:25:34,723] multiqc [DEBUG ] No samples found: bbmap [2024-07-30 21:25:34,728] multiqc [DEBUG ] No samples found: bismark [2024-07-30 21:25:34,733] multiqc [DEBUG ] No samples found: biscuit [2024-07-30 21:25:34,738] multiqc [DEBUG ] No samples found: hicexplorer [2024-07-30 21:25:34,743] multiqc [DEBUG ] No samples found: hicup [2024-07-30 21:25:34,748] multiqc [DEBUG ] No samples found: hicpro [2024-07-30 21:25:34,752] multiqc [DEBUG ] No samples found: salmon [2024-07-30 21:25:34,757] multiqc [DEBUG ] No samples found: kallisto [2024-07-30 21:25:34,763] multiqc [DEBUG ] No samples found: slamdunk [2024-07-30 21:25:34,768] multiqc [DEBUG ] No samples found: star [2024-07-30 21:25:34,773] multiqc [DEBUG ] No samples found: hisat2 [2024-07-30 21:25:34,779] multiqc [DEBUG ] No samples found: tophat [2024-07-30 21:25:34,784] multiqc [DEBUG ] No samples found: bowtie2 [2024-07-30 21:25:34,789] multiqc [DEBUG ] No samples found: bowtie1 [2024-07-30 21:25:34,794] multiqc [DEBUG ] No samples found: snpsplit [2024-07-30 21:25:34,799] multiqc [DEBUG ] No samples found: kat [2024-07-30 21:25:34,804] multiqc [DEBUG ] No samples found: leehom [2024-07-30 21:25:34,809] multiqc [DEBUG ] No samples found: adapterRemoval [2024-07-30 21:25:34,816] multiqc [DEBUG ] No samples found: clipandmerge [2024-07-30 21:25:34,821] multiqc [DEBUG ] No samples found: cutadapt [2024-07-30 21:25:34,825] multiqc [DEBUG ] No samples found: flexbar [2024-07-30 21:25:34,830] multiqc [DEBUG ] No samples found: kaiju [2024-07-30 21:25:34,835] multiqc [DEBUG ] No samples found: kraken [2024-07-30 21:25:34,839] multiqc [DEBUG ] No samples found: malt [2024-07-30 21:25:34,845] multiqc [DEBUG ] No samples found: trimmomatic [2024-07-30 21:25:34,851] multiqc [DEBUG ] No samples found: sickle [2024-07-30 21:25:34,857] multiqc [DEBUG ] No samples found: skewer [2024-07-30 21:25:34,863] multiqc [DEBUG ] No samples found: sortmerna [2024-07-30 21:25:34,869] multiqc [DEBUG ] No samples found: biobloomtools [2024-07-30 21:25:34,873] multiqc [DEBUG ] No samples found: fastq_screen [2024-07-30 21:25:34,878] multiqc [DEBUG ] No samples found: afterqc [2024-07-30 21:25:34,884] multiqc [DEBUG ] No samples found: fastp [2024-07-30 21:25:34,900] multiqc.modules.fastqc.fastqc [INFO ] Found 1 reports [2024-07-30 21:25:35,051] multiqc.modules.pycoqc.pycoqc [INFO ] Found 1 reports [2024-07-30 21:25:35,060] multiqc [DEBUG ] No samples found: minionqc [2024-07-30 21:25:35,066] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-07-30 21:25:35,071] multiqc [DEBUG ] No samples found: clusterflow [2024-07-30 21:25:35,076] multiqc [DEBUG ] No samples found: bcl2fastq [2024-07-30 21:25:35,081] multiqc [DEBUG ] No samples found: interop [2024-07-30 21:25:35,087] multiqc [DEBUG ] No samples found: ivar [2024-07-30 21:25:35,092] multiqc [DEBUG ] No samples found: flash [2024-07-30 21:25:35,100] multiqc [DEBUG ] No samples found: seqyclean [2024-07-30 21:25:35,104] multiqc [INFO ] Compressing plot data [2024-07-30 21:25:35,152] multiqc [INFO ] Report : 1/multiqc_report.html [2024-07-30 21:25:35,152] multiqc [INFO ] Data : 1/multiqc_data [2024-07-30 21:25:35,152] multiqc [DEBUG ] Moving data file from '/state/partition1/job-49173774/tmp4nv0p8bu/multiqc_data' to '1/multiqc_data' [2024-07-30 21:25:35,307] multiqc [INFO ] MultiQC complete