FastQCFastQC Report
Thu 14 Mar 2024
AA02_3098_a_merged.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameAA02_3098_a_merged.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70510
Sequences flagged as poor quality0
Sequence length73-108097
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCC4270.6055878598780315No Hit
ATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCCAGTGA2990.42405332576939436No Hit
ATGCCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCC1500.21273578215855907No Hit
TTATGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCCAGT1090.15458800170188625No Hit
TTATGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTAC1020.14466033186782018No Hit
TGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCCAGTGAA920.13047794639058288No Hit
TGTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCCA850.12055027655651682No Hit
ATGTACCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACC790.11204084527017444No Hit
ATGTAGTCTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCC770.10920436817472699No Hit
GTCCTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCCAG730.10353141398383209No Hit
ATGTACTGTACTTCGTTCAGTTACGTATTGCTAAGGTTAACTTACTACCC710.10069493688838463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)