[2024-03-15 18:42:41,974] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-03-15 18:42:41,975] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-03-15 18:42:41,975] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-03-15 18:42:41,975] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-03-15 18:42:42,346] multiqc [WARNING] MultiQC Version v1.21 now available! [2024-03-15 18:42:42,346] multiqc [INFO ] This is MultiQC v1.9 [2024-03-15 18:42:42,346] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc 1/ -o 1/ [2024-03-15 18:42:42,346] multiqc [DEBUG ] Working dir : /vast/gencore/ONT/work/4a/cc90258b9544e783df46efc99ad36d [2024-03-15 18:42:42,346] multiqc [INFO ] Template : default [2024-03-15 18:42:42,346] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-03-15 18:42:42,346] multiqc [INFO ] Searching : /vast/gencore/ONT/work/4a/cc90258b9544e783df46efc99ad36d/1 [2024-03-15 18:42:42,347] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-03-15 18:42:42,347] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-44159100/tmpjztowfk8 [2024-03-15 18:42:42,586] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_2924_a_merged_fastqc.html [2024-03-15 18:42:42,595] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2024-03-15 18:42:43,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA02_3256_a_merged_fastqc.html [2024-03-15 18:42:43,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_3257_a_merged_fastqc.html [2024-03-15 18:42:43,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA02_3257_a_merged_fastqc.html [2024-03-15 18:42:43,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_3258_a_merged_fastqc.html [2024-03-15 18:42:43,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA02_3258_a_merged_fastqc.html [2024-03-15 18:42:43,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_3259_a_merged_fastqc.html [2024-03-15 18:42:43,863] multiqc [DEBUG ] File 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because it exceeded search pattern filesize limit: AA02_pycoqc.html [2024-03-15 18:42:44,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: AA02_pycoqc.html [2024-03-15 18:42:44,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: AA02_pycoqc.html [2024-03-15 18:42:44,482] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: AA02_pycoqc.html [2024-03-15 18:42:44,482] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: AA02_pycoqc.html [2024-03-15 18:42:44,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_pycoqc.json [2024-03-15 18:42:44,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: AA02_undetermined_merged_fastqc.html [2024-03-15 18:42:44,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: AA02_undetermined_merged_fastqc.html [2024-03-15 18:42:45,383] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-03-15 18:42:45,385] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-03-15 18:42:45,388] multiqc [DEBUG ] No samples found: custom_content [2024-03-15 18:42:45,402] multiqc [DEBUG ] No samples found: conpair [2024-03-15 18:42:45,407] multiqc [DEBUG ] No samples found: peddy [2024-03-15 18:42:45,412] multiqc [DEBUG ] No samples found: somalier [2024-03-15 18:42:45,417] multiqc [DEBUG ] No samples found: methylQA [2024-03-15 18:42:45,427] multiqc [DEBUG ] No samples found: mosdepth [2024-03-15 18:42:45,431] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-03-15 18:42:45,434] multiqc [DEBUG ] No samples found: qualimap [2024-03-15 18:42:45,439] multiqc [DEBUG ] No samples found: preseq [2024-03-15 18:42:45,445] multiqc [DEBUG ] No samples found: quast [2024-03-15 18:42:45,452] multiqc [DEBUG ] No samples found: qorts [2024-03-15 18:42:45,457] multiqc [DEBUG ] No samples found: rna_seqc [2024-03-15 18:42:45,464] multiqc [DEBUG ] No samples found: rockhopper [2024-03-15 18:42:45,468] multiqc [DEBUG ] No samples found: rsem [2024-03-15 18:42:45,478] multiqc [DEBUG ] No samples found: rseqc [2024-03-15 18:42:45,482] multiqc [DEBUG ] No samples found: busco [2024-03-15 18:42:45,487] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-03-15 18:42:45,491] multiqc [DEBUG ] No samples found: disambiguate [2024-03-15 18:42:45,496] multiqc [DEBUG ] No samples found: supernova [2024-03-15 18:42:45,508] multiqc [DEBUG ] No samples found: deeptools [2024-03-15 18:42:45,512] multiqc [DEBUG ] No samples found: sargasso [2024-03-15 18:42:45,517] multiqc [DEBUG ] No samples found: verifybamid [2024-03-15 18:42:45,521] multiqc [DEBUG ] No samples found: mirtrace [2024-03-15 18:42:45,525] multiqc [DEBUG ] No samples found: happy [2024-03-15 18:42:45,531] multiqc [DEBUG ] No samples found: mirtop [2024-03-15 18:42:45,537] multiqc [DEBUG ] No samples found: homer [2024-03-15 18:42:45,542] multiqc [DEBUG ] No samples found: macs2 [2024-03-15 18:42:45,546] multiqc [DEBUG ] No samples found: theta2 [2024-03-15 18:42:45,551] multiqc [DEBUG ] No samples found: snpeff [2024-03-15 18:42:45,558] multiqc [DEBUG ] No samples found: gatk [2024-03-15 18:42:45,562] multiqc [DEBUG ] No samples found: htseq [2024-03-15 18:42:45,568] multiqc [DEBUG ] No samples found: bcftools [2024-03-15 18:42:45,573] multiqc [DEBUG ] No samples found: featureCounts [2024-03-15 18:42:45,579] multiqc [DEBUG ] No samples found: fgbio [2024-03-15 18:42:45,591] multiqc [DEBUG ] No samples found: dragen [2024-03-15 18:42:45,597] multiqc [DEBUG ] No samples found: dedup [2024-03-15 18:42:45,601] multiqc [DEBUG ] No samples found: damageprofiler [2024-03-15 18:42:45,623] multiqc [DEBUG ] No samples found: biobambam2 [2024-03-15 18:42:45,628] multiqc [DEBUG ] No samples found: mtnucratio [2024-03-15 18:42:45,630] multiqc [DEBUG ] No samples found: picard [2024-03-15 18:42:45,653] multiqc [DEBUG ] No samples found: prokka [2024-03-15 18:42:45,657] multiqc [DEBUG ] No samples found: samblaster [2024-03-15 18:42:45,667] multiqc [DEBUG ] No samples found: samtools [2024-03-15 18:42:45,672] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-03-15 18:42:45,676] multiqc [DEBUG ] No samples found: bamtools [2024-03-15 18:42:45,680] multiqc [DEBUG ] No samples found: jellyfish [2024-03-15 18:42:45,688] multiqc [DEBUG ] No samples found: vcftools [2024-03-15 18:42:45,692] multiqc [DEBUG ] No samples found: longranger [2024-03-15 18:42:45,696] multiqc [DEBUG ] No samples found: stacks [2024-03-15 18:42:45,701] multiqc [DEBUG ] No samples found: varscan2 [2024-03-15 18:42:45,714] multiqc [DEBUG ] No samples found: bbmap [2024-03-15 18:42:45,719] multiqc [DEBUG ] No samples found: bismark [2024-03-15 18:42:45,723] multiqc [DEBUG ] No samples found: biscuit [2024-03-15 18:42:45,728] multiqc [DEBUG ] No samples found: hicexplorer [2024-03-15 18:42:45,732] multiqc [DEBUG ] No samples found: hicup [2024-03-15 18:42:45,738] multiqc [DEBUG ] No samples found: hicpro [2024-03-15 18:42:45,742] multiqc [DEBUG ] No samples found: salmon [2024-03-15 18:42:45,756] multiqc [DEBUG ] No samples found: kallisto [2024-03-15 18:42:45,760] multiqc [DEBUG ] No samples found: slamdunk [2024-03-15 18:42:45,765] multiqc [DEBUG ] No samples found: star [2024-03-15 18:42:45,770] multiqc [DEBUG ] No samples found: hisat2 [2024-03-15 18:42:45,775] multiqc [DEBUG ] No samples found: tophat [2024-03-15 18:42:45,780] multiqc [DEBUG ] No samples found: bowtie2 [2024-03-15 18:42:45,784] multiqc [DEBUG ] No samples found: bowtie1 [2024-03-15 18:42:45,793] multiqc [DEBUG ] No samples found: snpsplit [2024-03-15 18:42:45,799] multiqc [DEBUG ] No samples found: kat [2024-03-15 18:42:45,803] multiqc [DEBUG ] No samples found: leehom [2024-03-15 18:42:45,809] multiqc [DEBUG ] No samples found: adapterRemoval [2024-03-15 18:42:45,813] multiqc [DEBUG ] No samples found: clipandmerge [2024-03-15 18:42:45,828] multiqc [DEBUG ] No samples found: cutadapt [2024-03-15 18:42:45,832] multiqc [DEBUG ] No samples found: flexbar [2024-03-15 18:42:45,838] multiqc [DEBUG ] No samples found: kaiju [2024-03-15 18:42:45,843] multiqc [DEBUG ] No samples found: kraken [2024-03-15 18:42:45,847] multiqc [DEBUG ] No samples found: malt [2024-03-15 18:42:45,851] multiqc [DEBUG ] No samples found: trimmomatic [2024-03-15 18:42:45,855] multiqc [DEBUG ] No samples found: sickle [2024-03-15 18:42:45,860] multiqc [DEBUG ] No samples found: skewer [2024-03-15 18:42:45,864] multiqc [DEBUG ] No samples found: sortmerna [2024-03-15 18:42:45,870] multiqc [DEBUG ] No samples found: biobloomtools [2024-03-15 18:42:45,883] multiqc [DEBUG ] No samples found: fastq_screen [2024-03-15 18:42:45,890] multiqc [DEBUG ] No samples found: afterqc [2024-03-15 18:42:45,895] multiqc [DEBUG ] No samples found: fastp [2024-03-15 18:42:45,969] multiqc.modules.fastqc.fastqc [INFO ] Found 25 reports [2024-03-15 18:42:46,509] multiqc.modules.pycoqc.pycoqc [INFO ] Found 1 reports [2024-03-15 18:42:46,519] multiqc [DEBUG ] No samples found: minionqc [2024-03-15 18:42:46,523] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-03-15 18:42:46,527] multiqc [DEBUG ] No samples found: clusterflow [2024-03-15 18:42:46,532] multiqc [DEBUG ] No samples found: bcl2fastq [2024-03-15 18:42:46,537] multiqc [DEBUG ] No samples found: interop [2024-03-15 18:42:46,541] multiqc [DEBUG ] No samples found: ivar [2024-03-15 18:42:46,545] multiqc [DEBUG ] No samples found: flash [2024-03-15 18:42:46,550] multiqc [DEBUG ] No samples found: seqyclean [2024-03-15 18:42:46,583] multiqc [INFO ] Compressing plot data [2024-03-15 18:42:47,011] multiqc [INFO ] Report : 1/multiqc_report.html [2024-03-15 18:42:47,011] multiqc [INFO ] Data : 1/multiqc_data [2024-03-15 18:42:47,011] multiqc [DEBUG ] Moving data file from '/state/partition1/job-44159100/tmpjztowfk8/multiqc_data' to '1/multiqc_data' [2024-03-15 18:42:47,164] multiqc [INFO ] MultiQC complete